- Nov 17, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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- Nov 13, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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- Jul 02, 2020
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Helene Rimbert authored
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- Jun 17, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
now the nomenclature of the new geen ids can be setup in the config.yaml file. Also 2 new rules to compile the blat results and the anchoring summary
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Helene Rimbert authored
BUG: tag GMAP_Wholegenome was not added into the final GFF file. this is now corrected in reformatGmapWGGFF.py script
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- Jun 16, 2020
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Helene Rimbert authored
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- Jun 12, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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- May 29, 2020
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Helene Rimbert authored
new script to reformat output of gmap for whole genome results. Gmap create 1 feature gene per mrna. This script merges all mrna features under the same gene feature
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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- May 28, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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- May 19, 2020
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Helene Rimbert authored
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- May 14, 2020
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Helene Rimbert authored
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Helene Rimbert authored
ISBPs are now allowed to have some mismatches in the alignment. parameters have been added into the config.yaml file and are used accordingly in the rules and filterBam.py script
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- May 12, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
New script bin/convertGmapCoords.py to convert gmap results from rescur to pseudochromosome coordinates.
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Helene Rimbert authored
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- May 06, 2020
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Helene Rimbert authored
new rule gmapIndexTarget to prepare the whole genome index of the target genome. This index is needed to rescue genes without any mapping result in targeted mapping and gmap on target
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Helene Rimbert authored
now use all isoforms of genes when anchoring genes with gmap only (failed genes with targeted mapping approache)
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Helene Rimbert authored
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- May 04, 2020
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Helene Rimbert authored
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Helene Rimbert authored
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Helene Rimbert authored
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