1st dev fial version
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- Snakefile 25 additions, 4 deletionsSnakefile
- bin/checkFinalAnnot.py 137 additions, 0 deletionsbin/checkFinalAnnot.py
- bin/convertGmapCoords.py 3 additions, 3 deletionsbin/convertGmapCoords.py
- bin/gmapRescue.sh 60 additions, 47 deletionsbin/gmapRescue.sh
- bin/microMappingPipeline.py 17 additions, 27 deletionsbin/microMappingPipeline.py
- bin/recalcCoordsFromBlat.py 149 additions, 142 deletionsbin/recalcCoordsFromBlat.py
- bin/recalcGmapRescue.sh 17 additions, 15 deletionsbin/recalcGmapRescue.sh
- bin/renameGffID.py 324 additions, 0 deletionsbin/renameGffID.py
- config.yaml 6 additions, 3 deletionsconfig.yaml
- dag.pdf 0 additions, 0 deletionsdag.pdf
- rulegraph.pdf 0 additions, 0 deletionsrulegraph.pdf
- rules/bedtoolsClosest.smk 0 additions, 1 deletionrules/bedtoolsClosest.smk
- rules/geneAnchoring.smk 145 additions, 19 deletionsrules/geneAnchoring.smk
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