New configuration file for cluster compatibility: cluster-hpc2.json

cluster-hpc2.json

+{
+	"__default__" :
+	{
+		"time" : "00:15:00",
+		"n" : 1,
+		"partition" : "fast",
+		"mem" : "1G",
+        "jobName" : "{rule}"
+	},
+	"mapHomologousRegions" :
+	{
+		"time" : "12:00:00",
+		"mem" : "8G",
+		"partition" : "normal"
+	},
+	"gmapRescue":
+	{
+		"time" : "12:00:00",
+		"mem" : "8G",
+		"partition" : "normal"
+	},
+	"gmapIndexTarget":
+	{
+		"time" : "1-00:00:00",
+		"mem" : "64G",
+		"partition" : "normal"
+	},
+	"indexQuery":
+	{
+		"time" : "01:00:00",
+		"mem" : "4G",
+		"partition" : "normal"
+	},
+	"indexTarget":
+	{
+		"time" : "01:10:00",
+		"mem" : "4G",
+		"partition" : "normal"
+	},
+    "selectMappedISBP":
+    {
+        "mem" : "4G"
+    },
+    "keepMappedOnSameChrom":
+    {
+        "mem" : "4G",
+        "time" : "01:00:00"
+    }
+}