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Commit 44dc7297 authored by Helene Rimbert's avatar Helene Rimbert
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force python to execute version 3.5

parent c3567566
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#!/usr/bin/env python3
#!/usr/bin/env python3.5
# coding: utf-8
import os.path
from os import path
......
#!/usr/bin/env python3
#!/usr/bin/env python3.5
# coding: utf-8
import os.path
from os import path
......
......@@ -4,7 +4,7 @@ rule filterBam:
output: temp(config['results']+'/1.filteredISBPs.bam')
params: mapq=config['mapq'], mismatches=config['mismatches']
log: config['results']+'/1.filterBam.log'
shell: "bin/filterBam.py {input} {output} {params.mapq} {params.mismatches} 1> {log}"
shell: "bin/filterBam.py {input} {output} {params.mapq} {params.mismatches} &> {log}"
rule bam2bed:
message: "Convert Filtered BAM file into BED"
......
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