new path to files for v2.1 and reintegrate Unknown chromosome

config.yaml

 annotationQuery: 'data/IWGSC_v1.1_20170706.gff3'
 featureType: 'gene'
-queryFasta: 'data/query.fasta'
-targetFasta: 'data/target.fasta'
-isbpBam: 'data/ISBP_refseqv2mapping.bam'
+queryFasta: 'data/161010_Chinese_Spring_v1.0_pseudomolecules.fasta'
+targetFasta: 'data/CS_pesudo_v2.1.fa'
+isbpBam: 'data/iwgsc_refseqv1_ISBP.bwav2.1.bam'
 isbpBed: 'data/ISBP_refseqv1.bed'
 results: 'resultsDEV'
-blastdb: 'data/query_mrna_blastdb'
-chromosomes: ['1A', '2A', '3A', '4A', '5A', '6A', '7A', '1B', '2B', '3B', '4B', '5B', '6B', '7B', '1D', '2D', '3D', '4D', '5D', '6D', '7D']
+blastdb: 'data/IWGSCv1.1_repr_mrna'
+chromosomes: ['1A', '2A', '3A', '4A', '5A', '6A', '7A', '1B', '2B', '3B', '4B', '5B', '6B', '7B', '1D', '2D', '3D', '4D', '5D', '6D', '7D', 'U']