Commits · 8f9f2efd0afe490ec422381c7aceb496a16c6b9a · SVdetection / cnvpipelines

Aug 17, 2018
- Run in an existing working dir now just erase config and keep other files · 8f9f2efd
  Floreal Cabanettes authored 6 years ago
  
  8f9f2efd
Aug 08, 2018
- Fix type · d15924cc
  Floreal Cabanettes authored 6 years ago
  
  d15924cc
- Fix windows · 0cb9738e
  Floreal Cabanettes authored 6 years ago
  
  0cb9738e
- Fix syntax · 160c1432
  Floreal Cabanettes authored 6 years ago
  
  160c1432
- Change pindel window size to 10M with a overlap change from 100K to 50K · 3fb68ce8
  Floreal Cabanettes authored 6 years ago
  
  3fb68ce8
- Remove mCNV for default launch · a554a2c4
  Floreal Cabanettes authored 6 years ago
  
  a554a2c4
Aug 07, 2018
- Update submodules to latest · c0a12e42
  Floreal Cabanettes authored 6 years ago
  
  c0a12e42
- Simulation: allow to use custom frequencies for variants · 0393a803
  Floreal Cabanettes authored 6 years ago
  
  0393a803
Aug 06, 2018
- Fix for simulation · b9b0bf11
  Floreal Cabanettes authored 6 years ago
  
  b9b0bf11
- Update popsim submodule · e27220bb
  Floreal Cabanettes authored 6 years ago
  
  e27220bb
- Fix for snakemake >= 5.0 · 9d265049
  Floreal Cabanettes authored 6 years ago
  
  9d265049
- Fix typo · 3fc63cf8
  Floreal Cabanettes authored 6 years ago
  
  3fc63cf8
- Fix pindel command · efb63afe
  Floreal Cabanettes authored 6 years ago
  
  efb63afe
- Change cluster reservation for pindel · 7da74cb1
  Floreal Cabanettes authored 6 years ago
  
  7da74cb1
- Make command much readable · cd9d7c85
  Floreal Cabanettes authored 6 years ago
  
  cd9d7c85
- Remove bad wildcard · 3814f78e
  Floreal Cabanettes authored 6 years ago
  
  3814f78e
- Remove bad wildcard · f7544daa
  Floreal Cabanettes authored 6 years ago
  
  f7544daa
- Fix: pindel detect all variants type grouped · 16f1c496
  Floreal Cabanettes authored 6 years ago
  
  16f1c496
- Fix folder name · ae98056b
  Floreal Cabanettes authored 6 years ago
  
  ae98056b
- Pindel windows: place in a subdir, remove subdir after merge · dea55fc2
  Floreal Cabanettes authored 6 years ago
  
  dea55fc2
- Move windowed files in subdir for pindel (try fixing problem...) · 89eba335
  Floreal Cabanettes authored 6 years ago
  
  89eba335
- Remove unused genotyping rule · a2da3720
  Floreal Cabanettes authored 6 years ago
  
  a2da3720
- Fix log filenames · 4a1cfad1
  Floreal Cabanettes authored 6 years ago
  
  4a1cfad1
- Make script executable · 2dd074ab
  Floreal Cabanettes authored 6 years ago
  
  2dd074ab
- Add logs · 94947ee1
  Floreal Cabanettes authored 6 years ago
  
  94947ee1
- Try fix: move script in file and run it with shell · 9705f19b
  Floreal Cabanettes authored 6 years ago
  
  9705f19b
- Revert "Fix pindel command" · 640474a5
  Floreal Cabanettes authored 6 years ago
  
  This reverts commit f5639d2d.
  640474a5
- Fix pindel command · 5c75940b
  Floreal Cabanettes authored 6 years ago
  
  5c75940b
- Use regions in pindel command · da35bb3f
  Floreal Cabanettes authored 6 years ago
  
  da35bb3f
- removing duplicate calls from pindel · d9dd88e1
  Thomas Faraut authored 6 years ago and Floreal Cabanettes committed 6 years ago
  
  d9dd88e1
- Fix type of data · 9b65b121
  Floreal Cabanettes authored 6 years ago
  
  9b65b121
- Fix typo · cfc46d52
  Floreal Cabanettes authored 6 years ago
  
  cfc46d52
- Split pindel staff by regions · 7520fbc3
  Floreal Cabanettes authored 6 years ago
  
  7520fbc3
Aug 03, 2018
- updating lib · e4f84832
  Thomas Faraut authored 6 years ago
  
  e4f84832
- . is now PASS in the FILTER column of any filtered vcf · 794b0dd5
  Thomas Faraut authored 6 years ago
  
  794b0dd5
Aug 02, 2018
- Update submodules to latest · be99ccf4
  Floreal Cabanettes authored 6 years ago
  
  be99ccf4
Jul 30, 2018
- Fix snakemake bug: change date of reference file · 0cddc75d
  Floreal Cabanettes authored 6 years ago
  
  0cddc75d
- Fix bug on simulation if no genomestrip in tools · 5fee3a25
  Floreal Cabanettes authored 6 years ago
  
  5fee3a25
- Remove nstretch file from popsim parameters · a4599c24
  Floreal Cabanettes authored 6 years ago
  
  a4599c24
- Remove also fai file · d21d3343
  Floreal Cabanettes authored 6 years ago
  
  d21d3343

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