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Commit 3fc63cf8 authored by Floreal Cabanettes's avatar Floreal Cabanettes
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Fix typo

parent efb63afe
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1 merge request!12Split pindel detection in 20mb windows
......@@ -45,7 +45,7 @@ rule pindel:
" --number_of_threads {threads}"
" --report_interchromosomal_events false"
" --minimum_support_for_event 3 -c {wildcards.chrom}:{wildcards.chrbatch}"
" -o {wildcards.batch}/pindel/{wildcard.chrom}/{wildcards.chrbatch}/pindel_{wildcards.chrom}"
" -o {wildcards.batch}/pindel/{wildcards.chrom}/{wildcards.chrbatch}/pindel_{wildcards.chrom}"
" 1>{log.stdout} 2>{log.stderr}"
"""
for svtype in D TD INV RP SI LI BP CloseEndMapped INT_final;
......
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