Fix for snakemake >= 5.0

snakecnv/align.snk

@@ -69,8 +69,8 @@ rule bamindex:
     threads:
         1
     log:
-        stdout = "logs/mapindex_{sample}.o",
-        stderr = "logs/mapindex_{sample}.e"
+        stdout = "logs/mapindex_{sample}_{folder}.o",
+        stderr = "logs/mapindex_{sample}_{folder}.e"
     shell:
         "samtools index {input}; "
         "samtools flagstat {input} > {output.summary}"