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Commit cd9d7c85 authored by Floreal Cabanettes's avatar Floreal Cabanettes
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Make command much readable

parent 3814f78e
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1 merge request!12Split pindel detection in 20mb windows
......@@ -67,7 +67,7 @@ rule mergepindelbatches:
threads:
1
shell:
"mergepindelbatches.py {output.D} {input.D} 1>{log.stdout} 2>{log.stderr}; "
"mergepindelbatches.py {output.INV} {input.INV} 1>>{log.stdout} 2>>{log.stderr}; "
"mergepindelbatches.py {output.TD} {input.TD} 1>>{log.stdout} 2>>{log.stderr}; "
"mergepindelbatches.py {output.D} {input.D} 1>{log.stdout} 2>{log.stderr};\n"
"mergepindelbatches.py {output.INV} {input.INV} 1>>{log.stdout} 2>>{log.stderr};\n"
"mergepindelbatches.py {output.TD} {input.TD} 1>>{log.stdout} 2>>{log.stderr};\n"
"rm -rf {wildcards.batch}/pindel/{wildcards.chrom}"
\ No newline at end of file
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