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Commit 5fee3a25 authored by Floreal Cabanettes's avatar Floreal Cabanettes
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Fix bug on simulation if no genomestrip in tools

parent a4599c24
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......@@ -1052,12 +1052,12 @@ class CnvPipeline:
"maxNstretches": max_n_stretches,
"overlap_cutoff": overlap_cutoff,
"left_precision": left_precision,
"right_precision": right_precision
"right_precision": right_precision,
"rb_subdir": "refbundle"
}
if "genomestrip" in tools:
config["refbundle"] = os.path.join("refbundle", "reference.fasta")
config["rb_subdir"] = "refbundle"
if sv_list is not None:
svlist_final = os.path.join(self.wdir, os.path.basename(sv_list))
self._link(sv_list, svlist_final)
......
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