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Receptacle de methode numérique pour la simulation EDI
Approche EF et Fourier
EF:
Fourier: Simulateurs basés sur la transformé de Fourier discrete (discrete Fourier transform FFTW) pour des modèles (3D) de dynamique de population ou de génétique.
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Gauthier Quesnel / irritator
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PAPPSO / MassChroQ
GNU General Public License v3.0 onlyMassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.
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URGI-Anagen / TE_finder
CeCILL Free Software License Agreement v2.0A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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Dépôts contenant les fichiers de construction et codes liés au microscope SPIM du PIAF
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R'MES is a tool for studying word frequencies in biological sequences.
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A library of Cost Function Networks and other graphical model instances (MRF, PWMaxSat,...).
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Thomas Schiex / toulbar2-save
MIT LicenseThis a the private clone archive of toulbar2. The real project is on GitHub. This one contains the "diverse solution" branch that needs to be pulled in the main repo (master)
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toolbar is an exact discrete optimization tool for graphical models. For most use cases, it has been obsoleted by toulbar2 (on GitHub).
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CarthaGène is multi-population genetic/radiated hybrid mapping software. CarthaGene looks for multiple populations maximum likelihood consensus maps using a fast EM algorithm for maximum likelihood estimation and powerful ordering algorithms.
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The aim of this project is to provide an R package for big integer (and big rational) computations. This is achieved via an C++ interface to the GNU MP ("GMP") library, and S3 classes "bigz", "bigq", etc.
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Mathieu Buoro / IBASAM
GNU General Public License v3.0 onlyA demo-genetic individual-based model for Atlantic salmon populations
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Sylvain Jasson / amap
GNU General Public License v3.0 onlyAnother multidimensional analysis packag : Hierarchical clustering and principal component analysis with both general and robusts methods
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Documents des cours
Méthodes de preuves, optimisation et satisfaction de contraintes (MPOSC) M2R IA, UPS Toulouse. Modélisation probabiliste et Algorithmes pour la Biologie (MAB) M2R IA, UPS Toulouse. Graphes et réseaux, SupAero Toulouse.Updated -
A standalone version of the function performing dynamic programming in a band
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Algorithms for dense linear systems and used for Finites Elements Method. Simulators codes.
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