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i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution

Projet de la version V2 de l'application des ORE.

Le projet est constitué de 2 sous projet :

La partie serveur qui fournit les web services de l'application

La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service

Package R with a shiny interface to run an interactive differential gene/region expression analysis.

Meteor (Metagenomic Explorator), a software for profiling metagenomic data at gene level

Connecteur entre dataverse et jupyterhub

Pipeline Nextflow

Helper for using Nextcloud client command line tool nextcloudcmd with log analysis and alert sending through Mattermost in case of sync issues.

Suivi des Applications jaVa d'Agroclim

R-package proposing a framework to apply FAIR principles based on reports created using the bookdown R-package and published as a website (e.g. gitlab pages) and data located on a owncloud/nextcloud server

mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis.

A Python scripting interface for CB-Geo MPM

DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.

This tool is expected to be easily customizable for specific filters, environments, or data schemas.

MCQR is a comprehensive set of objects and function for R to handle MassChroQ results.