i2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

Crash Course On Bayesian Regression Modelling. https://umr-astre.pages.mia.inra.fr/training/crashbayes/

Projet de la version V2 de l'application des ORE.

Le projet est constitué de 2 sous projet :

La partie serveur qui fournit les web services de l'application

La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.

This tool is expected to be easily customizable for specific filters, environments, or data schemas.

Package R with a shiny interface to run an interactive differential gene/region expression analysis.

Notebooks Jupyter

Environment for Markov Decision Processes in Gymnasium (formerly OpenGym)