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Angular interface of the Cassiopée software

Production version of Cassiopée is available at https://cassiopee.g-eau.fr

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

Package R with a shiny interface to run an interactive differential gene/region expression analysis.

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

MCQR is a comprehensive set of objects and function for R to handle MassChroQ results.

diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library

github mirror: https://github.com/MetExplore/dexom-python

Fish migration monitoring, database connection and treatment

This project is the entrypoint for an Information System dedicated to manage a forest experimentation metadata catalog. It relies on a metadata standard available at URL https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/ELXRGY.

R package wrapping the jalhyd library

Documentation : https://hanna.bacave.pages.mia.inra.fr/odhmm/

Lightweight C++ and Java library to produce Open Document Spreadsheet (.ods) files. The main goal is to write data as simply as writing it to a simple text file (csv or tsv). Libodsstream allows yout to read and write ODS files as stream

Dépôt publique de documentation de référence sur logiciels, méthodes ou pratiques pour les chercheurs, collaborateurs et étudiants de l'UMR ASTRE. Contact : facundo.munoz@cirad.fr

Javascript Library for Hydraulics used in Cassiopée.

https://cassiopee.g-eau.fr

Hardware description and pieces of software for DIY MiniRead 96-well plate optical reader, designed to monitor growth kinetics of yeast (or bacterial) cells.