GitLab

MassChroQ (Mass Chromatogram Quantification) is a powerfull and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from Liquid Chromatography-Mass Spectrometry techniques.

DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.

This tool is expected to be easily customizable for specific filters, environments, or data schemas.

FAIDARE: FAIR Data-finder for Agronomic Research This application provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

MCQR is a comprehensive set of objects and function for R to handle MassChroQ results.

Un Hackathon pour le développement logiciel et l'administration système des Interactive Tools de Galaxy

HIPL stands for heavy isotope protein labelling. It is basically a project where we use IsoSpecPy for simulating isotopic clusters of peptides that were labelled with 15N.

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.

A full description of X!TandemPipeline has been published in: Langella O, Valot B, Balliau T, Blein-Nicolas

Ce projet est un exemple de plugin utilisant le noyau de l'application des SOERE

Ontologies

Miroir du projet kernel

Tool used to tranfert annotation between different versions of assemblies.

A temporary archive to store the ACP/GdR IA/GdRRO/ANITI "Summer" (now Fall) school

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

Next Generation Sequencing Information System

Code for Learning Cost Function Networks