Explore projects
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Angular interface of the Cassiopée software
Production version of Cassiopée is available at https://cassiopee.g-eau.fr
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PAPPSO / PAPPSOms-tools
GNU General Public License v3.0 onlyset of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....
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PAPPSO / pappsomspp
GNU General Public License v3.0 onlyPAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...
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Package R with a shiny interface to run an interactive differential gene/region expression analysis.
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OLIVARES Jerome / horizon
Creative Commons Attribution 3.0 UnportedUpdated -
URGI-Anagen / TE_finder
CeCILL Free Software License Agreement v2.0A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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PO2-Tools / PO²Manager
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PAPPSO / MCQR
GNU General Public License v3.0 onlyMCQR is a comprehensive set of objects and function for R to handle MassChroQ results.
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metexplore / cbm / dexom_python
GNU General Public License v3.0 or laterdiversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
github mirror: https://github.com/MetExplore/dexom-python
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Stacomi / stacomiR
GNU General Public License v3.0 or laterFish migration monitoring, database connection and treatment
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in-sylva development / in-sylva.information-system
GNU General Public License v3.0 or laterThis project is the entrypoint for an Information System dedicated to manage a forest experimentation metadata catalog. It relies on a metadata standard available at URL https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/ELXRGY.
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Cassiopée projects / CassiopeeR
GNU Affero General Public License v3.0R package wrapping the jalhyd library
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PAPPSO / libodsstream
OtherLightweight C++ and Java library to produce Open Document Spreadsheet (.ods) files. The main goal is to write data as simply as writing it to a simple text file (csv or tsv). Libodsstream allows yout to read and write ODS files as stream
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Dépôt publique de documentation de référence sur logiciels, méthodes ou pratiques pour les chercheurs, collaborateurs et étudiants de l'UMR ASTRE. Contact : facundo.munoz@cirad.fr
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Cassiopée / jalhyd
GNU Affero General Public License v3.0Javascript Library for Hydraulics used in Cassiopée.
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GQE-BASE / MiniRead
GNU General Public License v3.0 onlyHardware description and pieces of software for DIY MiniRead 96-well plate optical reader, designed to monitor growth kinetics of yeast (or bacterial) cells.
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