GitLab

MCQR is a comprehensive set of objects and function for R to handle MassChroQ results.

fichiers de support pour EDO Sys Dyn - MAM3 EPU Nice Sophia

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.

A full description of X!TandemPipeline has been published in: Langella O, Valot B, Balliau T, Blein-Nicolas

Extraction and pre-processing modules in Python to extract raw data from HDF5 file generated by Phenomobile

FAIDARE: FAIR Data-finder for Agronomic Research This application provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

A library that contains a subset of the ProteoWizard libpwiz library with code mainly aimed at loading MS files (XML-based and MGF).

Un Hackathon pour le développement logiciel et l'administration système des Interactive Tools de Galaxy

Sirius Quality BioMa Wheat LAI module

Adaptation of miRDeep2.0.0.5 for dicotyledons, with replaced scripts in which parameters were optimized for dicot plants. This parameters come from Characterization of statistical features for plant microRNA prediction-Thakur V &al -BMC Genomics

ETL tool that transforms the result of SQL queries into json, xml or any other specific format

DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.

This tool is expected to be easily customizable for specific filters, environments, or data schemas.

Materials for ENAC course on graphs and networks. It contains slides and practical exercices for the course. A list of past exams is also available.

Example GitBook site using GitLab Pages: https://pages.gitlab.io/gitbook

The aim of this package is to provide a full genomic features annotation from genomic coordinates, without use an annotation priority.