GitLab

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.

A full description of X!TandemPipeline has been published in: Langella O, Valot B, Balliau T, Blein-Nicolas

Annotation pipeline (transform SGBDR/CSV data to rdf)

Supports pour la formation shiny - Plateforme de Biostatistique – Génopole Toulouse Midi-Pyrénées

Documentation and presentation materials of the project

Construction and Analysis of Protein-Protein Interactions (PPI) NETWORKS for complexes and biological processes

Livre bookdown de Data Science appliquée à l'agronomie sens large

DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.

This tool is expected to be easily customizable for specific filters, environments, or data schemas.

Projet de la version V2 de l'application des ORE.

Le projet est constitué de 2 sous projet :

La partie serveur qui fournit les web services de l'application

La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service

MCQR is a comprehensive set of objects and function for R to handle MassChroQ results.

Requirements and design of a R package for analysing data from Mark-Capture-Recapture experiments for the effective management of invasive Aedes mosquitoes.

Dépôt publique de documentation de référence sur logiciels, méthodes ou pratiques pour les chercheurs, collaborateurs et étudiants de l'UMR ASTRE. Contact : facundo.munoz@cirad.fr

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

A presentation and day book area.

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. It has been developed in collaboration with several CATI BIOS4biol agents.

Template for data-analysis projects using R and targets.

MassChroQ (Mass Chromatogram Quantification) is a powerfull and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from Liquid Chromatography-Mass Spectrometry techniques.

Projet Difuse Activite 1: Caractérisation de la diversité des pratiques et des points de vue des acteurs manifestant leur volonté de s’engager dans le changement face aux urgences socio-écologiques au sein la Recherche Pour le Développement.