Tags

This version contains updates concerning the space migration and purge system.

More informations in this tag's release notes.

This updates contains mostly fixes for existing workflows.

More informations in this tag's release notes.

New 'switch_space_id' workflow (issue #129)

More informations in the release notes.

Updates since the last release:

Issue#121: When sending a purge mail, the "Error-to" mail field will be set as the "email_from" value instead of "email_copy".

Issue#119: The Run and Analysis views have been updated to include a new line explainig the retention policy.

Issue#126: The superadmin users can now update any password, and can see all runs on the runs list page. (https://ng6.toulouse.inra.fr/index.php?id=56)

Issue#134: The "index" variables have been renamed to "readsi".

Issues#131,#132,#112: 
Pdf files added to analysis for nanopore runs.
AligmentStats -> Duplicate output corrected.
New analysis : Demultiplex Stat for ONT

The superadmin feature was missing from the last tag.
Several bug have also been fixed. For more informations, check this tag's release notes.

Adds a new illumuna_qc_10X pipelines to ng6

New features and fixes, check the release note.

This tag includes 2 bug corrections related to NG6's addanalysis, for both commands and web interface. 

-Fixes the 'Nonetype object has no space_id' error, that appeared following the V3.2.5.1 implementation.
-Analyzes added to a run now have a correct space_id.

This tag contains an issue fix missing from 3.2.5

UI issues fixed, storage spaces implemented.

Add N50 to te runs status ONT_QC

bug fixes enhancement  :
ONT- improvement and Bug : removing of porechop trimming,
GENERAL - run date in tx_ng6_run is wrong

bug fixes
enhancement

manage runs with more than 650 samples
correct user information update from the interface

ng6 with slurm optimization of some data processing for a better efficiency (work on a data subset, parallelization...) update jflow version less duplication of data for illumina pipelines upgrade typo3 plugin to be compatible with the last LTR typo3 version V8 and php 7 add project and data management, allowing to delete data old data (based on retention date)
 ff867bc4 · Merge branch 'nG6-Slurm' into 'master' · 3 weeks ago
ng6 with slurm
optimization of some data processing for a better efficiency (work on a data subset, parallelization...)
update jflow version
less duplication of data for illumina pipelines
upgrade typo3 plugin to be compatible with the last LTR typo3 version V8 and php 7
add project and data management, allowing to delete data old data (based on retention date)

added purge data management
update samtools and picard tools version
add ONT QC workflow

Passage de ng6 à Git
Intégration de ONT_qc
Intégration de la gestion des purges 
Password updatable