Merge branch 'ng6_ontqc-update' into 'master'

Add N10 read lenght to the ont_qc run status

See merge request !27

ui/nG6/pi1/analyzes/Run_stats.tpl

@@ -386,6 +386,10 @@ along with this program.  If not, see <http://www.gnu.org/licenses/>.
 					<li><strong>N90 read length</strong> : 
 					90% of all bases come from reads longer than this value.
 				</li>
+				</li>
+					<li><strong>N10 read length</strong> : 
+					10% of all bases come from reads longer than this value.
+				</li>
 				<li><strong>Mean read quality</strong> : 
 					The mean quality (qscore ONT) for this Flow Cell.
 				</li>

workflows/ont_qc/components/run_stats.py

@@ -73,6 +73,7 @@ class Run_stats (Analysis):
             if parts[0] == "mean_read_length": stats["mean_read_length"] = parts[1]
             if parts[0] == "N50_read_length": stats["N50_read_length"] = parts[1]
             if parts[0] == "N90_read_length": stats["N90_read_length"] = parts[1]
+            if parts[0] == "N10_read_length": stats["N10_read_length"] = parts[1]
             if parts[0] == "mean_read_quality": stats["mean_read_quality"] = parts[1]
             if parts[0] == "mean_yield_per_sec": stats["mean_yield_per_sec"] = parts[1]
             if parts[0] == "longread1": stats["longread1"] = parts[1]
@@ -86,6 +87,7 @@ class Run_stats (Analysis):
             if parts[0] == "mean_read_length_Q7": stats["mean_read_length_Q7"] = parts[1]
             if parts[0] == "N50_read_length_Q7": stats["N50_read_length_Q7"] = parts[1]
             if parts[0] == "N90_read_length_Q7": stats["N90_read_length_Q7"] = parts[1]
+            if parts[0] == "N10_read_length_Q7": stats["N10_read_length_Q7"] = parts[1]
             if parts[0] == "mean_read_quality_Q7": stats["mean_read_quality_Q7"] = parts[1]
             if parts[0] == "mean_yield_per_sec_Q7": stats["mean_yield_per_sec_Q7"] = parts[1]
             if parts[0] == "longread1_Q7": stats["longread1_Q7"] = parts[1]
@@ -99,6 +101,7 @@ class Run_stats (Analysis):
             if parts[0] == "mean_read_length_Q9": stats["mean_read_length_Q9"] = parts[1]
             if parts[0] == "N50_read_length_Q9": stats["N50_read_length_Q9"] = parts[1]
             if parts[0] == "N90_read_length_Q9": stats["N90_read_length_Q9"] = parts[1]
+            if parts[0] == "N10_read_length_Q9": stats["N10_read_length_Q9"] = parts[1]
             if parts[0] == "mean_read_quality_Q9": stats["mean_read_quality_Q9"] = parts[1]
             if parts[0] == "mean_yield_per_sec_Q9": stats["mean_yield_per_sec_Q9"] = parts[1]
             if parts[0] == "longread1_Q9": stats["longread1_Q9"] = parts[1]
@@ -165,6 +168,7 @@ class Run_stats (Analysis):
                             "mean_read_length",
                             "N50_read_length",
                             "N90_read_length",
+                            "N10_read_length",
                             "mean_read_quality",
                             "mean_yield_per_sec",
                             "longread1",
@@ -183,6 +187,7 @@ class Run_stats (Analysis):
                             "mean_read_length_Q7",
                             "N50_read_length_Q7",
                             "N90_read_length_Q7",
+                            "N10_read_length_Q7",
                             "mean_read_quality_Q7",
                             "mean_yield_per_sec_Q7",
                             "longread1_Q7",
@@ -201,6 +206,7 @@ class Run_stats (Analysis):
                             "mean_read_length_Q9",
                             "N50_read_length_Q9",
                             "N90_read_length_Q9",
+                            "N10_read_length_Q9",
                             "mean_read_quality_Q9",
                             "mean_yield_per_sec_Q9",
                             "longread1_Q9",