Commits · d2335b5200757e8b429a5f20464ec04b59d1a220 · UMR GDEC / magatt

Jun 09, 2023
- IMPROVE: add conda pragma into all rules and docler path for use with --singularity option · d2335b52
  Helene Rimbert authored 1 year ago
  
  d2335b52
Dec 15, 2020
- merge rules isbpsort and split into on single rule bam2bed · 596b1b4c
  Helene Rimbert authored 4 years ago
  
  596b1b4c
- remove temporary fasta files to loawer disk usage. lower coverage and identity... · 1f7f7adf
  Helene Rimbert authored 4 years ago
  
  remove temporary fasta files to loawer disk usage. lower coverage and identity threshold in gmap rescue
  1f7f7adf
Nov 17, 2020
- grep chromosme case insensitive · 56c7a454
  Helene Rimbert authored 4 years ago
  
  56c7a454
Nov 13, 2020
- add temp file definition · 239e9a09
  Helene Rimbert authored 4 years ago
  
  239e9a09
- cleaning code with temporary files · ae5e9fe3
  Helene Rimbert authored 4 years ago
  
  ae5e9fe3
Jun 16, 2020
- force python to execute version 3.5 · 44dc7297
  Helene Rimbert authored 4 years ago
  
  44dc7297
May 14, 2020

ISBPs are now allowed to have some mismatches in the alignment. parameters... · 00d0109a

Helene Rimbert authored 4 years ago

ISBPs are now allowed to have some mismatches in the alignment. parameters have been added into the config.yaml file and are used accordingly in the rules and filterBam.py script

00d0109a

May 04, 2020
- BUG: remove option -w in fgrep which causes grep of genes from Unknown chromosome to fail · 34abf1a4
  Helene Rimbert authored 4 years ago
  
  34abf1a4
Feb 10, 2020
- new rule splitISBP:task is now parallelised per chromosome · 6132a27f
  Helene Rimbert authored 5 years ago
  
  6132a27f
Dec 17, 2019
- new snakemake rule geneAnchoring.smk · 16d31b3b
  Helene Rimbert authored 5 years ago
  
  16d31b3b
Dec 16, 2019
- update snakemake rules · 953851b9
  Helene Rimbert authored 5 years ago
  
  953851b9

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