Commits · d2335b5200757e8b429a5f20464ec04b59d1a220 · UMR GDEC / magatt · GitLab

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Jun 09, 2023
- IMPROVE: add conda pragma into all rules and docler path for use with --singularity option · d2335b52
  Helene Rimbert authored 1 year ago
  
  d2335b52
Dec 15, 2020
- remove temporary fasta files to loawer disk usage. lower coverage and identity... · 1f7f7adf
  Helene Rimbert authored 4 years ago
  
  remove temporary fasta files to loawer disk usage. lower coverage and identity threshold in gmap rescue
  1f7f7adf
Nov 13, 2020
- correction typo whent setting up temporary file in bedtoolsclosest.smk · a93fa1c1
  Helene Rimbert authored 4 years ago
  
  a93fa1c1
- cleaning code with temporary files · ae5e9fe3
  Helene Rimbert authored 4 years ago
  
  ae5e9fe3
May 28, 2020
- 1st dev fial version · 08268dae
  Helene Rimbert authored 4 years ago
  
  v0.1
  
  08268dae
May 04, 2020
- BUG: remove -w from the fgrep command in the split per chrom rule. This cause... · ee0ee67d
  Helene Rimbert authored 4 years ago
  
  BUG: remove -w from the fgrep command in the split per chrom rule. This cause a bug resulting into empty output
  ee0ee67d
Feb 07, 2020
- parallel upstream and downstream marker per chromosome · ea50b37d
  Helene Rimbert authored 5 years ago
  
  ea50b37d
Jan 17, 2020
- Final version of blatMapping pipeline · 13be85a0
  Helene Rimbert authored 5 years ago
  
  13be85a0
Dec 20, 2019
- add result directory to gitignore file, remove markersIds from mapping pipeline · 7465d454
  Helene Rimbert authored 5 years ago
  
  7465d454
Dec 17, 2019
- new snakemake rule geneAnchoring.smk · 16d31b3b
  Helene Rimbert authored 5 years ago
  
  16d31b3b
Dec 16, 2019
- update snakemake rules · 953851b9
  Helene Rimbert authored 5 years ago
  
  953851b9