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Commit ee0ee67d authored by Helene Rimbert's avatar Helene Rimbert
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BUG: remove -w from the fgrep command in the split per chrom rule. This cause...

BUG: remove -w from the fgrep command in the split per chrom rule. This cause a bug resulting into empty output
parent 90e2a185
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......@@ -53,6 +53,6 @@ rule splitPerChrom:
log: config['results']+'/2.closestbed_split/{chrom}.split.log'
shell:
"""
fgrep -w {params.chromPref} {input.upstream} 1> {output.splitUp} 2> {log}
fgrep -w {params.chromPref} {input.downstream} 1> {output.splitDown} 2>> {log}
"""
\ No newline at end of file
fgrep {params.chromPref} {input.upstream} 1> {output.splitUp} 2> {log}
fgrep {params.chromPref} {input.downstream} 1> {output.splitDown} 2>> {log}
"""
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