Commits · e9bb3df8db491c991fd5f5a4631fe2b47757edcc · SVdetection / cnvpipelines

May 02, 2018
- Update user documentation · e9bb3df8
  Floreal Cabanettes authored 6 years ago
  
  e9bb3df8
- Fix syntax · cc66a5a0
  Floreal Cabanettes authored 6 years ago
  
  cc66a5a0
- Fix syntax · 953062c4
  Floreal Cabanettes authored 6 years ago
  
  953062c4
- Improve cnv variants output declaration + add logs · 6278c60d
  Floreal Cabanettes authored 6 years ago
  
  6278c60d
- Fix CNV pipeline · 8c64d91c
  Floreal Cabanettes authored 6 years ago
  
  8c64d91c
- Fix intervallist rule · 4c95b317
  Floreal Cabanettes authored 6 years ago
  
  4c95b317
- Fix CNV workflow · 5dd32135
  Floreal Cabanettes authored 6 years ago
  
  5dd32135
- Fix snakefile syntax · 1ff23db0
  Floreal Cabanettes authored 6 years ago
  
  1ff23db0
- Fix all rules for CNV type · 84896b4d
  Floreal Cabanettes authored 6 years ago
  
  84896b4d
- Fix all rules for CNV type · f7314bd6
  Floreal Cabanettes authored 6 years ago
  
  f7314bd6
- Add CNV variant type + add option to choose which variant types to detect + refactoring · ae5b445a
  Floreal Cabanettes authored 6 years ago
  
  ae5b445a
- Fix config reader · f2aa9252
  Floreal Cabanettes authored 6 years ago
  
  f2aa9252
Apr 30, 2018
- Update install documentation · 89927731
  Floreal Cabanettes authored 6 years ago
  
  89927731
- Update requirements.txt · c279270a
  Floreal Cabanettes authored 6 years ago
  
  c279270a
Apr 27, 2018
- Merge branch 'svtyper_parallel' into 'master' · fdb330dd
  Floreal Cabanettes authored 7 years ago
  
  Svtyper parallel See merge request genotoul-bioinfo/cnvpipelines!7
  fdb330dd
- Change svtyper in mergebatches to new version · 5ed38e2a
  Floreal Cabanettes authored 7 years ago
  
  5ed38e2a
- Change mergebatches to make it compatible with the new version · 49a55e6b
  Floreal Cabanettes authored 7 years ago
  
  49a55e6b
- Change mergebatches to make it compatible with the new version · 3f64f857
  Floreal Cabanettes authored 7 years ago
  
  3f64f857
- Change mergebatches to make it compatible with the new version · f5f1d04c
  Floreal Cabanettes authored 7 years ago
  
  f5f1d04c
- Fix mergebatches workflow · eb4852d2
  Floreal Cabanettes authored 7 years ago
  
  eb4852d2
- Fix mergebatches workflow · 8404638e
  Floreal Cabanettes authored 7 years ago
  
  8404638e
- Fix code · 33116e9c
  Floreal Cabanettes authored 7 years ago
  
  33116e9c
- Fix crash on second run · c8953bd4
  Floreal Cabanettes authored 7 years ago
  
  c8953bd4
- Fix crash on second run · 2829eaab
  Floreal Cabanettes authored 7 years ago
  
  2829eaab
- Improve error messages · 9ae11bb8
  Floreal Cabanettes authored 7 years ago
  
  9ae11bb8
- Fix typo · 905c1d62
  Floreal Cabanettes authored 7 years ago
  
  905c1d62
- Add fai requirement to all fasta inputs · 69e29cfd
  Floreal Cabanettes authored 7 years ago
  
  69e29cfd
- Port to pysam >= 0.14 · 2cc768ee
  Floreal Cabanettes authored 7 years ago
  
  2cc768ee
- Fix samtools index command · d1ed737c
  Floreal Cabanettes authored 7 years ago
  
  d1ed737c
- Fix typo · 7dabd7f3
  Floreal Cabanettes authored 7 years ago
  
  7dabd7f3
- Add missing input file to nstretch · babb2a7a
  Floreal Cabanettes authored 7 years ago
  
  babb2a7a
- Restore previous code: fix has been done in svtyper · bd7962eb
  Floreal Cabanettes authored 7 years ago
  
  bd7962eb
- Fix genotype svtyper rule · 7325ca13
  Floreal Cabanettes authored 7 years ago
  
  7325ca13
- Fix genotype svtyper rule · 5d52f9cf
  Floreal Cabanettes authored 7 years ago
  
  5d52f9cf
- Fix genotype svtyper rule · fab1d9a0
  Floreal Cabanettes authored 7 years ago
  
  fab1d9a0
- Fix svtyper launcher · 7fae3604
  Floreal Cabanettes authored 7 years ago
  
  7fae3604
- Fix genotype svtyper rule · 79d5e2f3
  Floreal Cabanettes authored 7 years ago
  
  79d5e2f3
- Remove packed svtyper lib · 16b368c7
  Floreal Cabanettes authored 7 years ago
  
  16b368c7
- Fix: make script executable · 2a7c2e27
  Floreal Cabanettes authored 7 years ago
  
  2a7c2e27
- Refactor svtyper to take care of empty vcf input files · ad04455c
  Floreal Cabanettes authored 7 years ago
  
  ad04455c