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Commit 953062c4 authored by Floreal Cabanettes's avatar Floreal Cabanettes
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Fix syntax

parent 6278c60d
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1 merge request!8Connect cnv pipeline to global pipeline + make it generic
......@@ -31,7 +31,7 @@ rule cnvpipeline:
output:
{batch}/cnvpipeline/{chrom}/cnvpipeline_{chrom}.vcf.gz
log:
stdout="{batch}/logs/cnvpipeline/{chrom}.o"
stdout="{batch}/logs/cnvpipeline/{chrom}.o",
stderr="{batch}/logs/cnvpipeline/{chrom}.e"
shell:
"cnvpipeline.sh {input.bamlist} {input.genome}"
......
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