Fix svtyper launcher

snakecnv/bin/svtyper_launcher.py

@@ -34,9 +34,9 @@ def launch(bamlist, input_vcf, output_vcf, threads):
                                       vcf_in=input_vcf,
                                       vcf_out=vcf_out,
                                       cores=threads)
-            tabix_compress(vcf_out, output_vcf)
+            tabix_compress(vcf_out, output_vcf, True)
             os.remove(vcf_out)
-            tabix_index(output_vcf)
+            tabix_index(output_vcf, force=True, preset="vcf")
     except:
         # Except all exception
         traceback.print_exc()