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Commit 5dd32135 authored by Floreal Cabanettes's avatar Floreal Cabanettes
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Fix CNV workflow

parent 1ff23db0
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1 merge request!8Connect cnv pipeline to global pipeline + make it generic
......@@ -19,7 +19,7 @@ rule intervallist:
rule cnvpipeline:
input:
unpack(snakemake_utils.get_inputs_bams),
bamlist = "{batch}/genomestrip/bamlist.list",
bamlist = "{batch}/bamlist.list",
gendermap = "{batch}/genomestrip/gendermap.txt",
metadatadone = "{batch}/genomestrip/metadata/sample_gender.report.txt",
intervallist = "cnvpipeline/{chrom}/interval.list",
......
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