Commits · 5225e199ea7b1b886ad292adf958b17aa608144b · SVdetection / cnvpipelines

Dec 04, 2018
- - delly ex is now mine · 5225e199
  Thomas Faraut authored 6 years ago
  
  - get_regions to exclude uses not mad
  5225e199
Aug 06, 2018
- Fix: pindel detect all variants type grouped · 16f1c496
  Floreal Cabanettes authored 6 years ago
  
  16f1c496
- Fix folder name · ae98056b
  Floreal Cabanettes authored 6 years ago
  
  ae98056b
- Pindel windows: place in a subdir, remove subdir after merge · dea55fc2
  Floreal Cabanettes authored 6 years ago
  
  dea55fc2
- Move windowed files in subdir for pindel (try fixing problem...) · 89eba335
  Floreal Cabanettes authored 6 years ago
  
  89eba335
- Use regions in pindel command · da35bb3f
  Floreal Cabanettes authored 6 years ago
  
  da35bb3f
- Fix type of data · 9b65b121
  Floreal Cabanettes authored 6 years ago
  
  9b65b121
- Split pindel staff by regions · 7520fbc3
  Floreal Cabanettes authored 6 years ago
  
  7520fbc3
Jun 01, 2018
- Make snakecnv/lib as submodule + move files · 41296a03
  Floreal Cabanettes authored 6 years ago
  
  41296a03
Apr 18, 2018
- adding svtype DUP · aeed36c4
  Thomas Faraut authored 6 years ago
  
  aeed36c4
Apr 17, 2018
- Add snakefile for align fastq files on reference · 92cdf48f
  Floreal Cabanettes authored 6 years ago
  
  92cdf48f
- completed conflict resolve after merge from master · 2f61fa7b
  Thomas Faraut authored 6 years ago
  
  2f61fa7b
Apr 12, 2018
- readlength corrected · fc5c8906
  Thomas Faraut authored 6 years ago
  
  fc5c8906
Apr 11, 2018
- fixing stdout and stderr for delly and lumpy and other details · 22f3bb62
  Thomas Faraut authored 6 years ago
  
  22f3bb62
Apr 09, 2018
- delly-ready pipeline · 9239ba7e
  Thomas Faraut authored 6 years ago
  
  9239ba7e
Apr 08, 2018
- removing extraction · b23f51b5
  Thomas Faraut authored 6 years ago
  
  b23f51b5
Mar 20, 2018
- Fix batches · fdb6baf1
  Floreal Cabanettes authored 7 years ago
  
  fdb6baf1
- Change batch definition · 7f9edbd3
  Floreal Cabanettes authored 7 years ago
  
  7f9edbd3
- Add batches to pindel and lumpy · 5386867b
  Floreal Cabanettes authored 7 years ago
  
  5386867b
- Fix and refactor batches · 0e2ec3b4
  Floreal Cabanettes authored 7 years ago
  
  0e2ec3b4
Mar 19, 2018
- Fix functions returns · cb542e9f
  Floreal Cabanettes authored 7 years ago
  
  cb542e9f
- Fix functions · 7ca9e3d6
  Floreal Cabanettes authored 7 years ago
  
  7ca9e3d6
- Fix delly · c4e488fd
  Floreal Cabanettes authored 7 years ago
  
  c4e488fd
- Try to add batches support with delly · 2aa37cbc
  Floreal Cabanettes authored 7 years ago
  
  2aa37cbc
Mar 13, 2018
- Refactor tree · 4c0abd9f
  Floreal Cabanettes authored 7 years ago
  
  4c0abd9f
- Add inversions svtype to the workflow · fca4b348
  Floreal Cabanettes authored 7 years ago
  
  fca4b348
Feb 05, 2018
- added parsing merging and genotyping · eceb3c6b
  Thomas Faraut authored 7 years ago
  
  eceb3c6b
Feb 02, 2018
- added lib dir for snakecnvpipeline · 3c092b4a
  Thomas Faraut authored 7 years ago
  
  3c092b4a
Jan 30, 2018
- Initial commit of the snakemake cnv pipeline · b2c02442
  Thomas Faraut authored 7 years ago
  
  b2c02442

Admin message