Fix functions

snakecnv/lib/svsnakemake_utils.py

@@ -69,7 +69,7 @@ class SnakemakeUtils:
 
     def get_inputs_extracted(self, wildcards):
         inputs = []
-        for sample in self.samples[wildcards.batch]:
+        for sample in self.samples[int(wildcards.batch)]:
             inputs.append("{batch}/extraction/{chrom}/{sample}.bam".format(
                 batch=wildcards.batch, chrom=wildcards.chrom, sample=sample
             ))
@@ -77,6 +77,6 @@ class SnakemakeUtils:
 
     def get_inputs_bams(self, wildcards):
         inputs = []
-        for sample in self.samples[wildcards.batch]:
+        for sample in self.samples[int(wildcards.batch)]:
             inputs.append("data/bams/{sample}.bam".format(sample=sample))
         return inputs