.gitmodules

snakecnv/align_snakemake_utils.py

snakecnv/lib

snakecnv/lib/svfilter.py

snakecnv/lib/svreader/__init__.py

snakecnv/lib/svreader/_version.py

snakecnv/lib/svreader/defaults.py

snakecnv/lib/svreader/delly.py

snakecnv/lib/svreader/genomestrip.py

snakecnv/lib/svreader/lumpy.py

snakecnv/lib/svreader/pindel.py

snakecnv/lib/svreader/resources/b37.gaps.bed

snakecnv/lib/svreader/resources/hg19.gaps.bed

snakecnv/lib/svreader/resources/template.vcf

snakecnv/lib/svreader/resources/template_breakdancer.vcf

snakecnv/lib/svreader/resources/template_cnvnator.vcf

snakecnv/lib/svreader/resources/template_merge.vcf

snakecnv/lib/svreader/resources/template_pindel.vcf

snakecnv/lib/svreader/vcf_utils.py

snakecnv/lib/svreader/vcfwrapper.py