Commits · 36981c37edf520a946c3a74d49e825951818dc25 · PAPPSO / xtpcpp

Nov 26, 2018
- work on the mascot dat parser · 36981c37
  Langella Olivier authored 6 years ago
  
  36981c37
Nov 02, 2018
- fix start position in mzidentml files · 010adcba
  Langella Olivier authored 6 years ago
  
  010adcba
Oct 30, 2018
- fixed mascot parser for single fasta file · 160db657
  Langella Olivier authored 6 years ago
  
  160db657
Oct 03, 2018
- some missing information to parse in a near futur · e51036c5
  Langella Olivier authored 6 years ago
  
  e51036c5
- grab retention time from msgf+ mzidentml files · afa06946
  Langella Olivier authored 6 years ago
  
  afa06946
- grab specific informations from MS-GF+ mzidentML files · 6c8d555c
  Langella Olivier authored 6 years ago
  
  6c8d555c
- find psi mod accession with unimod accession · 8fbf7d14
  Langella Olivier authored 6 years ago
  
  8fbf7d14
- fix adding modification at position -1 in pwiz reader · 0ad05745
  Langella Olivier authored 6 years ago
  
  0ad05745
Oct 02, 2018
- find MS run file on basename or samplename. · 8bfbe7cf
  Langella Olivier authored 6 years ago
  
  get sample name from Mascot dat parameters.
  8bfbe7cf
- grab mascot parameters · ef77225c
  Langella Olivier authored 6 years ago
  
  ef77225c
- indentation · f6af7221
  Langella Olivier authored 6 years ago
  
  f6af7221
- more reliable mascot parser · 6f5cfa9d
  Langella Olivier authored 6 years ago
  
  6f5cfa9d
Sep 03, 2018
- indentation with clang format v6.0 · 49c90b0a
  Langella Olivier authored 6 years ago
  
  49c90b0a
Jul 09, 2018
- mzidentml: get protein description if cvParam is used · 9cc330cb
  Langella Olivier authored 6 years ago
  
  9cc330cb
- mzidentml : circumvent buggy spectrum id · 01a1fa8e
  Langella Olivier authored 6 years ago
  
  01a1fa8e
- pepxml : take into account buggy engines that do not use correctly protein... · eccbbcd0
  Langella Olivier authored 6 years ago
  
  pepxml : take into account buggy engines that do not use correctly protein accession and description
  eccbbcd0
Jun 21, 2018
- store msgf isotope error · 0e6edafa
  Langella Olivier authored 6 years ago
  
  0e6edafa
- xpip reader backward compatibility · c1317b80
  Langella Olivier authored 6 years ago
  
  c1317b80
- better pepxml reader for omssa, comet, msgf+ identifications · 15dddcdf
  Langella Olivier authored 6 years ago
  
  15dddcdf
Jun 20, 2018
- xtpcpp is able to load multiple search engine in mzidentml · 59cc11bc
  Langella Olivier authored 6 years ago
  
  59cc11bc
- set peptide mass using the precursor neutral mass · a9a57d51
  Langella Olivier authored 6 years ago
  
  a9a57d51
Jun 19, 2018
- new peptide column to display search engine · eaeb228e
  Langella Olivier authored 6 years ago
  
  eaeb228e
- WIP: better pep xml support · a7057bfd
  Langella Olivier authored 6 years ago
  
  a7057bfd
- new: store identification engine in peptide evidence · 86b2c9df
  Langella Olivier authored 6 years ago
  
  86b2c9df
- WIP: parsing pep xml files · 53a96c0a
  Langella Olivier authored 6 years ago
  
  53a96c0a
Jun 18, 2018
- WIP : parsing pep XML files · ef2478b4
  Langella Olivier authored 6 years ago
  
  ef2478b4
May 03, 2018
- normalized spectral abundance factor done · a38f4016
  Langella Olivier authored 6 years ago
  
  a38f4016
Mar 25, 2018
- use mhphlus observed given by tandem to compute experimental mass · aea56bb7
  Langella Olivier authored 7 years ago
  
  aea56bb7
Mar 08, 2018
- setting variable and fixed modifications · 6f27113f
  Langella Olivier authored 7 years ago
  
  6f27113f
- coding variable modifications on peptides (MASCOT) · ba4da882
  Langella Olivier authored 7 years ago
  
  ba4da882
Mar 07, 2018
- read decoy peptide in mascot dat file · 32e92c77
  Langella Olivier authored 7 years ago
  
  32e92c77
- apply evalue threshold on mascot files · a2e3d68f
  Langella Olivier authored 7 years ago
  
  a2e3d68f
- WIP: mascot dat parser · 710474f2
  Langella Olivier authored 7 years ago
  
  710474f2
Mar 06, 2018
- WIP: Mascot parser · d0769d1c
  Langella Olivier authored 7 years ago
  
  d0769d1c
- same evalue as computed by MASCOT java dat parser · c82e8b16
  Langella Olivier authored 7 years ago
  
  c82e8b16
- compute MASCOT evalue · 93d79254
  Langella Olivier authored 7 years ago
  
  93d79254
Mar 05, 2018
- WIP: Mascot parser · 00e57c9c
  Langella Olivier authored 7 years ago
  
  00e57c9c
- WIP: Mascot parser · a4ae5d55
  Langella Olivier authored 7 years ago
  
  a4ae5d55
Mar 04, 2018
- WIP: Mascot parser · 29e9d01b
  Langella Olivier authored 7 years ago
  
  29e9d01b
- WIP: Mascot parser · 80d20985
  Langella Olivier authored 7 years ago
  
  80d20985