src/core/msrun.h

src/core/tandem_run/tandembatchprocess.cpp

src/core/tandem_run/tandemparameters.cpp

src/files/tandemparametersfile.cpp

src/gui/edit_tandem_preset_dialog/edittandempresetdialog.cpp

src/gui/protein_view/proteinwindow.cpp

src/gui/ptm_peptide_list_view/ptmpeptidelistwindow.cpp

src/gui/ptm_peptide_list_view/ptmpeptidetableproxymodel.cpp

src/gui/tandem_run_dialog/tandemrundialog.cpp

src/gui/workerthread.cpp

src/input/mascot/mascotdatparser.cpp

src/input/mascot/mascotdatparser.h

src/input/pepxmlsaxhandler.cpp

src/input/xpipsaxhandler.cpp

src/output/masschroqml.cpp

src/output/ods/peptidepossheet.cpp

src/output/ods/peptidesheet.cpp

src/output/ods/ptm/ptmislandsheet.cpp

src/output/ods/samplesheet.cpp

src/output/ods/spectrasheet.cpp