src/core/automaticfilterparameters.cpp

src/core/automaticfilterparameters.h

src/core/identification_sources/identificationdatasource.h

...re/identification_sources/identificationmascotdatfile.cpp

...core/identification_sources/identificationmascotdatfile.h

src/core/identification_sources/identificationpepxmlfile.h

src/core/identification_sources/identificationpwizfile.h

...core/identification_sources/identificationxtandemfile.cpp

src/core/identification_sources/identificationxtandemfile.h

src/core/identificationgroup.cpp

src/core/identificationgroup.h

src/core/labeling/label.cpp

src/core/labeling/label.h

src/core/labeling/labelingmethod.cpp

src/core/labeling/labelingmethod.h

src/core/msrun.h

src/core/peptidematch.cpp

src/core/peptidematch.h

src/core/peptidextp.cpp

src/core/peptidextp.h