work on the mascot dat parser

src/input/mascot/mascotdatparser.h

@@ -74,9 +74,11 @@ class MascotDatParser
   };
   struct QueryLine
   {
-    unsigned int query_index = 0;
-    unsigned int charge      = 0;
-    pappso::pappso_double rt = 0;
+    std::size_t parsed_scan_number = 0;
+    std::size_t query_index       = 0;
+    unsigned int index             = 0;
+    unsigned int charge            = 0;
+    pappso::pappso_double rt       = 0;
     QString title;
   };
   struct SummaryLine
@@ -87,7 +89,8 @@ class MascotDatParser
   };
   void savePeptideList(std::vector<PeptideLine> &peptide_list, bool is_decoy);
   pappso::pappso_double
-  getEvalue(pappso::pappso_double ion_score, SummaryLine &summary_line,
+  getEvalue(pappso::pappso_double ion_score,
+            SummaryLine &summary_line,
             pappso::pappso_double confidence_interval = 0.05) const;
   pappso::pappso_double
   getEvalueExperimental(pappso::pappso_double ion_score,
@@ -105,9 +108,9 @@ class MascotDatParser
 
 
   QRegExp _regexp_header_line;
+  QRegExp _regexp_parse_scan;
   unsigned int _number_of_queries   = 0;
   unsigned int _number_of_residues  = 0;
-  unsigned int _current_query_index = 0;
   QString _error_str;
   bool _is_decoy_section = false;