Commits · 854efb8498c4f4c640adeaff4da6854deca0eefc · PAPPSO / i2MassChroQ

Feb 15, 2012

Separated contaminants database filter on separated class · 854efb84

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@214 b8ef2a07-7df7-436f-90b9-41648038564b

854efb84

Modify adding mzXML extension on maschroqML export · 75b59180

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@213 b8ef2a07-7df7-436f-90b9-41648038564b

75b59180

Experimental mascot evalue are not enabled for now, waiting more test · 16e130a4
valot authored 13 years ago
```
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@212 b8ef2a07-7df7-436f-90b9-41648038564b
```
16e130a4

Feb 14, 2012

Add mascotdatfile library in classpath · 3d677d36

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@211 b8ef2a07-7df7-436f-90b9-41648038564b

3d677d36

Remove file extension for sample name · 70debc24

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@210 b8ef2a07-7df7-436f-90b9-41648038564b

70debc24

· 879d00fc

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@209 b8ef2a07-7df7-436f-90b9-41648038564b

879d00fc

Add 2 modes of calculation of the mascot evalue (theoritical/experimental) · c3d2da50
valot authored 13 years ago
```
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@208 b8ef2a07-7df7-436f-90b9-41648038564b
```
c3d2da50

· 5ca993b3

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@207 b8ef2a07-7df7-436f-90b9-41648038564b

5ca993b3

Rename decoy text box to included mascot · be3335c3

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@206 b8ef2a07-7df7-436f-90b9-41648038564b

be3335c3

Feb 13, 2012

Add remove contaminants database by reading fasta file and compared accession · f3ca193d

valot authored 13 years ago

Add compattibility of contaminants selection for Mascot

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@205 b8ef2a07-7df7-436f-90b9-41648038564b

f3ca193d

Add Mascotdatfile library · 19317184

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@204 b8ef2a07-7df7-436f-90b9-41648038564b

19317184

Correction of phosphopeptide import for Mascot · 1b91cc89

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@203 b8ef2a07-7df7-436f-90b9-41648038564b

1b91cc89

· 1bc0d20a

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@202 b8ef2a07-7df7-436f-90b9-41648038564b

1bc0d20a

Feb 10, 2012

mz min and mz max are now computed : no array sort needed · ddb7128f

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@201 b8ef2a07-7df7-436f-90b9-41648038564b

ddb7128f

Feb 09, 2012

Add phosphoImport for Mascot file · 46045fc2

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@200 b8ef2a07-7df7-436f-90b9-41648038564b

46045fc2

Corrected FDR calculation on Reverse Option · faf744c9

valot authored 13 years ago

Add reverse option from Mascot file

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@199 b8ef2a07-7df7-436f-90b9-41648038564b

faf744c9

Mascot File work fine, including MSMS spectra visualization · 963e3041

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@198 b8ef2a07-7df7-436f-90b9-41648038564b

963e3041

Feb 08, 2012

Complete DataSource, seems not work on Mascot · 33fbce05

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@197 b8ef2a07-7df7-436f-90b9-41648038564b

33fbce05

· feea6069

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@196 b8ef2a07-7df7-436f-90b9-41648038564b

feea6069

new IdentificationDataSourceSet · 0b3c5f1a

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@195 b8ef2a07-7df7-436f-90b9-41648038564b

0b3c5f1a

new interface · 8f4ebccd

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@194 b8ef2a07-7df7-436f-90b9-41648038564b

8f4ebccd

new interface for DataSource · c25c9b65

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@193 b8ef2a07-7df7-436f-90b9-41648038564b

c25c9b65

Feb 07, 2012

· ac00841b

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@192 b8ef2a07-7df7-436f-90b9-41648038564b

ac00841b

First parser for Macot file, debugging in progress · 0f1b9012

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@191 b8ef2a07-7df7-436f-90b9-41648038564b

0f1b9012

xpip schema · 7a8cc71e

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@190 b8ef2a07-7df7-436f-90b9-41648038564b

7a8cc71e

new xml schema for XPIP · 8d8a4fe3

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@189 b8ef2a07-7df7-436f-90b9-41648038564b

8d8a4fe3

Feb 06, 2012

introducing IdentificationDataFile · 28590df0

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@188 b8ef2a07-7df7-436f-90b9-41648038564b

28590df0

Test MimeMultipart for Mascot dat file · 5e80b08e

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@187 b8ef2a07-7df7-436f-90b9-41648038564b

5e80b08e

Feb 03, 2012

new gnumail library to parse mime multipart · 3a8a05fd

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@186 b8ef2a07-7df7-436f-90b9-41648038564b

3a8a05fd

Jan 27, 2012

xtandempipeline (3.1.5-2) oneiric · 9f3846dd

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@185 b8ef2a07-7df7-436f-90b9-41648038564b

9f3846dd

Jan 26, 2012

3.1.5-1 kératine moustachue · 3a4d5936

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@184 b8ef2a07-7df7-436f-90b9-41648038564b

3a4d5936

3.1.5-1 kératine moustachue · 16aac6bd

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@183 b8ef2a07-7df7-436f-90b9-41648038564b

16aac6bd

3.1.5 release!! · ce4e7423

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@182 b8ef2a07-7df7-436f-90b9-41648038564b

ce4e7423

Jan 25, 2012

Correct samp order on maschroq export · 3f54f1d6

valot authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@181 b8ef2a07-7df7-436f-90b9-41648038564b

3f54f1d6

Jan 03, 2012

better ETD/CID discrimination · 32cb1841

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@180 b8ef2a07-7df7-436f-90b9-41648038564b

32cb1841

Jan 02, 2012

· 660dac30

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@179 b8ef2a07-7df7-436f-90b9-41648038564b

660dac30

Change svn eclipse plugin · 969fd88a

valot authored 13 years ago

Only search y/b phospho loss on MS2


git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@178 b8ef2a07-7df7-436f-90b9-41648038564b

969fd88a

Dec 21, 2011

Y and B ions with P loss · 3a20e8bb

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@177 b8ef2a07-7df7-436f-90b9-41648038564b

3a20e8bb

Dec 20, 2011

neutral loss of phosphorylated residue taken into account in CID fragmentation type · 9da0da29
langella authored 13 years ago
```
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@176 b8ef2a07-7df7-436f-90b9-41648038564b
```
9da0da29

xtandempipeline (3.1.4-4) oneiric; · 3929d534

langella authored 13 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@175 b8ef2a07-7df7-436f-90b9-41648038564b

3929d534

Admin message