...s_msms/IdentificationDataFile/IdentificationDataFile.java

...sms/IdentificationDataFile/IdentificationXtandemFile.java

.../src/fr/inra/pappso/xtandempipeline/class_msms/MsRun.java

...rc/fr/inra/pappso/xtandempipeline/class_msms/Peptide.java

...inra/pappso/xtandempipeline/sax_parse/XtandemPhospho.java

...r/inra/pappso/xtandempipeline/sax_parse/load_project.java

.../fr/inra/pappso/xtandempipeline/sax_parse/parse_file.java

...src/fr/inra/pappso/xtandempipeline/sax_parse/xtandem.java

...inra/pappso/xtandempipeline/sax_parse/xtandem_params.java

...e/src/fr/inra/pappso/xtandempipeline/thread/combined.java

...src/fr/inra/pappso/xtandempipeline/thread/individual.java

...rc/fr/inra/pappso/xtandempipeline/thread/phosphosite.java

...ne/src/fr/inra/pappso/xtandempipeline/thread/process.java

.../inra/pappso/xtandempipeline/thread/xtandem_analysis.java

...fr/inra/pappso/xtandempipeline/ui/swt/Filter_Windows.java

...pappso/xtandempipeline/ui/swt/Xtandem_Analysis_Param.java

...fr/inra/pappso/xtandempipeline/ui/swt/Xtandem_preset.java