xpip schema

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@190 b8ef2a07-7df7-436f-90b9-41648038564b

xtandempipeline/doc/files/xpip/xpip.xsd

@@ -15,7 +15,80 @@
 	<xs:element name="protein" type="proteinType" />
 	<xs:element name="protein_evalue" type="protein_evalueType" />
 	<xs:element name="sequence" type="xs:string" />
-	
+	<xs:element name="peptide_list" type="peptide_listType" />
+	<xs:element name="peptide" type="peptideType" />
+	<xs:element name="modifs" type="modifsType" />
+	<xs:element name="modif" type="modifType" />
+
+	<!-- <modif aa="M" modvalue="15.99" posi="8" posi_in_prot="295" /> -->
+	<xs:complexType name="modifType">
+		<xs:annotation>
+			<xs:documentation>
+				a peptide modification
+			</xs:documentation>
+		</xs:annotation>
+		<xs:attribute name="aa" type="xs:string"></xs:attribute>
+		<xs:attribute name="modvalue" type="xs:float"></xs:attribute>
+		<xs:attribute name="posi" type="xs:int"></xs:attribute>
+		<xs:attribute name="posi_in_prot" type="xs:int"></xs:attribute>
+	</xs:complexType>
+
+	<xs:complexType name="modifsType">
+		<xs:annotation>
+			<xs:documentation>
+				a peptide modification list
+			</xs:documentation>
+		</xs:annotation>
+		<xs:sequence>
+			<xs:element ref="modif" maxOccurs="unbounded" minOccurs="0" />
+		</xs:sequence>
+	</xs:complexType>
+
+
+	<!-- <peptide sample="2009_10_19_Pont_Lezica_Rafael_20_1_01_EFJ-1.xml" sample_file="/home/valot/analyse_en_cours/20110328_Douchet/Brachy_3/2009_10_19_Pont_Lezica_Rafael_20_1_01_EFJ-1.xml" 
+		scan="602" scan_in_xtandem="602" RT="218" mhplus_obser="933.3101" mhplus_theo="932.505" 
+		deltamass="0.805" sequence="SEIDNVKK" pre="QRLR" post="QISN" start="409" 
+		stop="416" charge="2" evalue="0.0044" hypercorr="39.3" validate="true"> <modifs></modifs> 
+		</peptide> -->
+	<xs:complexType name="peptideType">
+		<xs:annotation>
+			<xs:documentation>
+				a peptide
+			</xs:documentation>
+		</xs:annotation>
+		<xs:sequence>
+			<xs:element ref="modifs" maxOccurs="unbounded" minOccurs="1" />
+		</xs:sequence>
+		<xs:attribute name="sample" type="xs:string"></xs:attribute>
+		<xs:attribute name="sample_file" type="xs:string"></xs:attribute>
+		<xs:attribute name="sequence" type="xs:string"></xs:attribute>
+		<xs:attribute name="pre" type="xs:string"></xs:attribute>
+		<xs:attribute name="post" type="xs:string"></xs:attribute>
+		<xs:attribute name="scan" type="xs:int"></xs:attribute>
+		<xs:attribute name="scan_in_xtandem" type="xs:int"></xs:attribute>
+		<xs:attribute name="RT" type="xs:float"></xs:attribute>
+		<xs:attribute name="mhplus_obser" type="xs:float"></xs:attribute>
+		<xs:attribute name="deltamass" type="xs:float"></xs:attribute>
+		<xs:attribute name="mhplus_theo" type="xs:float"></xs:attribute>
+		<xs:attribute name="evalue" type="xs:float"></xs:attribute>
+		<xs:attribute name="hypercorr" type="xs:float"></xs:attribute>
+		<xs:attribute name="charge" type="xs:int"></xs:attribute>
+		<xs:attribute name="start" type="xs:int"></xs:attribute>
+		<xs:attribute name="stop" type="xs:int"></xs:attribute>
+		<xs:attribute name="validate" type="xs:boolean"></xs:attribute>
+
+	</xs:complexType>
+
+	<xs:complexType name="peptide_listType">
+		<xs:annotation>
+			<xs:documentation>
+				list of peptides
+			</xs:documentation>
+		</xs:annotation>
+		<xs:sequence>
+			<xs:element ref="peptide" maxOccurs="unbounded" minOccurs="0" />
+		</xs:sequence>
+	</xs:complexType>
 
 	<!-- <protein_evalue evalue="-5.853872" sample="20110323_Pontlezica_Raphael_1_B06_EFJ2-16.xml" 
 		/> -->
@@ -61,6 +134,7 @@
 		</xs:annotation>
 		<xs:sequence>
 			<xs:element ref="protein" maxOccurs="1" minOccurs="1" />
+			<xs:element ref="peptide_list" maxOccurs="1" minOccurs="1" />
 		</xs:sequence>
 		<xs:attribute name="validate" type="xs:boolean">
 		</xs:attribute>