Commits · 4de67483ef3c15d1fa5792d7deb0c88a2ea13270 · PAPPSO / i2MassChroQ · GitLab

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Nov 01, 2013
- XPIP file writer moved in output package with a writer · 4de67483
  Olivier Langella authored 11 years ago
  
  4de67483
Oct 31, 2013
- xtandempipeline (3.3.1-26) wheezy · 4810cdc0
  Olivier Langella authored 11 years ago
  
  4810cdc0
- new column added in ods output to know the theoretical number of tryptic peptides per prot · 514a4809
  Olivier Langella authored 11 years ago
  
  514a4809
- emPAI computing error fixed : all components are treated as double · 484dd156
  Olivier Langella authored 11 years ago
  
  484dd156
Oct 30, 2013
- Match object cleaning : function renamed, obsolete functions removed · 6eefa061
  Olivier Langella authored 11 years ago
  
  6eefa061
- getNumberOfSpecificPeptideInSubGroup renamed in getNumberOfSpecificSpectraInSubGroup · a8ab55fc
  Olivier Langella authored 11 years ago
  
  new column in ods output for protein : number of specific spectra
  a8ab55fc
Oct 28, 2013
- xtandempipeline launch menu placed in Science, rather than Education · ed771583
  Olivier Langella authored 11 years ago
  
  ed771583
- xtandempipeline (3.3.1-24) wheezy · 2536f863
  Olivier Langella authored 11 years ago
  
  2536f863
Oct 25, 2013
- emPAI added (Ishihama, Mann 2006) as requested by F. Rusconi · ac7ac994
  Olivier Langella authored 11 years ago
  
  ac7ac994
Oct 24, 2013
- check that command file exists and is executable · afb0c500
  Olivier Langella authored 11 years ago
  
  afb0c500
- PAI attribute added in matche element (F. Rusconi's request) · beb9f82a
  Olivier Langella authored 11 years ago
  
  beb9f82a
- PAI computing method checked · 6577611d
  Olivier Langella authored 11 years ago
  
  All PAI computed in xtp are using the same method : number of spectrums from valid peptides divided by the theoretical number of tryptic peptides
  6577611d
Oct 04, 2013
- xtandempipeline (3.3.1-23) wheezy · 1f8f27c0
  Olivier Langella authored 11 years ago
  
  1f8f27c0
Sep 30, 2013
- getBaseName function moved to PklFile · 4a7e69e9
  Olivier Langella authored 11 years ago
  
  4a7e69e9
- xtandempipeline (3.3.1-22) wheezy · e6cb6f80
  Olivier Langella authored 11 years ago
  
  e6cb6f80
- force threads to 1 in condor analysis · af940c0e
  Olivier Langella authored 11 years ago
  
  af940c0e
Sep 27, 2013
- uneeded imports removed · 08d4ef9a
  Olivier Langella authored 11 years ago
  
  08d4ef9a
- check that FastaFiles are readable · c69cd126
  Olivier Langella authored 11 years ago
  
  c69cd126
- huge refactoring to manage X!Tandem temporary files · 276a72ae
  Olivier Langella authored 11 years ago
  
  276a72ae
- masschroq ml writer uses now PeptideMassSet and PAPPSO numbering style · 2081f07e
  Olivier Langella authored 11 years ago
  
  2081f07e
Sep 25, 2013
- better with the new class · f4015f05
  Olivier Langella authored 11 years ago
  
  f4015f05
- xtandempipeline (3.3.1-21) wheezy; · 15588b81
  Olivier Langella authored 11 years ago
  
  15588b81
- compar PAI datasheet added to exports · 56474c18
  Olivier Langella authored 11 years ago
  
  56474c18
- new jar for ods2csv, better close function · a090f7a0
  Olivier Langella authored 11 years ago
  
  a090f7a0
Sep 19, 2013
- obsolete files removed · ca631c61
  Olivier Langella authored 11 years ago
  
  ca631c61
Sep 18, 2013
- possible null exception fixed in libodsstream and libproteomicsvg · 2ac7d5b8
  Olivier Langella authored 11 years ago
  
  new debian package
  2ac7d5b8
Sep 16, 2013
- xtandempipeline (3.3.1-19) wheezy · faf16600
  Olivier Langella authored 11 years ago
  
  faf16600
- prevent writing XPIP file to an URL · aaf95a05
  Olivier Langella authored 11 years ago
  
  aaf95a05
- check URL nature of XPIP file, new libodsstream · 08e6212a
  Olivier Langella authored 11 years ago
  
  08e6212a
- use java tempfile function to create temp directory · 5e43427e
  Olivier Langella authored 11 years ago
  
  5e43427e
- deb release 17 · 768d4f11
  Olivier Langella authored 11 years ago
  
  768d4f11
Sep 14, 2013
- spreadsheet expert mode selection added in export window · 182fe28d
  Olivier Langella authored 11 years ago
  
  182fe28d
Aug 29, 2013
- working on Phospho report · eac64d31
  Olivier Langella authored 11 years ago
  
  eac64d31
- really get the peptide corresponding to the spectra · c2e47326
  Olivier Langella authored 11 years ago
  
  c2e47326
- new function getMhDiff · 286bfa09
  Olivier Langella authored 11 years ago
  
  286bfa09
- new function to print list of string · b6b4d8ed
  Olivier Langella authored 11 years ago
  
  b6b4d8ed
- xtandempipeline (3.3.1-16) wheezy · eec8e72c
  Olivier Langella authored 11 years ago
  
  View commits for tag xtandempipeline_3.3.1-16_wheezy xtandempipeline_3.3.1-16_wheezy
  
  eec8e72c
Aug 28, 2013
- new dependency added to libswt-cairo-gtk-3-jni package · 21e8d93a
  Olivier Langella authored 11 years ago
  
  21e8d93a
- xtandempipeline (3.3.1-15) wheezy · c019f450
  Olivier Langella authored 11 years ago
  
  View commits for tag xtandempipeline_3.3.1-15_wheezy xtandempipeline_3.3.1-15_wheezy
  
  c019f450
- specific task to compile xtandempipeline on a Debian system · 18dd0538
  Olivier Langella authored 11 years ago
  
  18dd0538