compar PAI datasheet added to exports

src/fr/inra/pappso/xtandempipeline/thread/printing_base.java

@@ -190,6 +190,8 @@ public class printing_base extends process {
 			this.printComparSpectra(odsDoc);
 			logger.debug("Print new spectra specific");
 			this.printComparSpecificSpectra(odsDoc);
+			logger.debug("Print new compar pai");
+			this.printComparPai(odsDoc);
 
 			logger.debug("Print new spectra (expert)");
 			this.printSpectraList(odsDoc);
@@ -209,6 +211,10 @@ public class printing_base extends process {
 		this.add_current_progress();
 	}
 
+	protected void printComparPai(OdsDocWriter odsDoc) throws Exception {
+
+	}
+
 	protected void printComparSpecificSpectra(OdsDocWriter odsDoc)
 			throws Exception {
 	}

src/fr/inra/pappso/xtandempipeline/thread/printing_combine.java

@@ -5,6 +5,7 @@ import fr.inra.pappso.libodsstream.OdsDocWriter;
 import fr.inra.pappso.xtandempipeline.MsException.StopException;
 import fr.inra.pappso.xtandempipeline.class_msms.config;
 import fr.inra.pappso.xtandempipeline.class_msms.Identification;
+import fr.inra.pappso.xtandempipeline.output.SpreadSheets.OdsComparPaiOutput;
 import fr.inra.pappso.xtandempipeline.output.SpreadSheets.OdsComparSpecificSpectraOutput;
 import fr.inra.pappso.xtandempipeline.output.SpreadSheets.OdsComparSpectraOutput;
 
@@ -14,6 +15,40 @@ public class printing_combine extends printing_base {
 		super(conf);
 	}
 
+	@Override
+	protected void printComparPai(OdsDocWriter odsDoc) throws Exception {
+		logger.debug("printComparPai begin");
+
+		// Verification pas arrete
+		if (this.isStop())
+			throw new StopException("");
+		this.add_current_progress();
+
+		this.set_view("Printing compar PAI results");
+		if (this.isCsv) {
+			Ods2Csv ods2csv = new Ods2Csv();
+			ods2csv.setSinkFilename(this.getfileout().getAbsolutePath()
+					+ "_compar_pai.txt");
+
+			odsDoc = ods2csv.getOdsDocPipedOutput();
+		} else {
+		}
+
+		OdsComparPaiOutput writer = new OdsComparPaiOutput(odsDoc);
+		// output.open(this.getfileout().getAbsolutePath() + "_compar.txt");
+		for (Identification ident : this.identifications) {
+			this.writeMsSampleName(ident, odsDoc);
+			writer.write(ident);
+		}
+		logger.debug("printComparPai end");
+
+		if (this.isCsv) {
+			odsDoc.close();
+			logger.debug("csv file closed "
+					+ this.getfileout().getAbsolutePath() + "_compar_pai.txt");
+		}
+	}
+
 	@Override
 	protected void printComparSpectra(OdsDocWriter odsDoc) throws Exception {
 		logger.debug("printComparSpectra begin");