xtandempipeline (3.3.1-23) wheezy

debian/changelog

+xtandempipeline (3.3.1-23) wheezy; urgency=low
+
+  * D. Chevret has suggested a fix in the protein ODS sheet : keep the same behaviour as previous version for specific uniques spectra
+
+ --  Olivier Langella <Olivier.Langella@moulon.inra.fr>  Thu, 3 Oct 2013 08:20:51 +0200
+
 xtandempipeline (3.3.1-22) wheezy; urgency=low
 
   * new xtandemFiles objects to control X!Tandem analysis

src/fr/inra/pappso/xtandempipeline/output/SpreadSheets/OdsProteinOutput.java

@@ -188,13 +188,13 @@ public class OdsProteinOutput {
 
 			// odsTable.writeCell("Specific uniques");
 			int numberOfProtInSg = sg.getHashSampleScanSetProtSet().size();
-			if (numberOfProtInSg == 1) {
-				// there is no specific scan, because there is only one protein
-				odsTable.writeCell("");
-
-			} else {
+			// if (numberOfProtInSg == 1) {
+			if (group.getSubGroupSet().size() > 1) {
 				odsTable.writeCell(group
 						.getNumberOfSpecificUniquePeptideInSubGroup(hashProt));
+			} else {
+				// there is no specific scan, because there is only one subgroup
+				odsTable.writeCell("");
 			}
 			// odsTable.writeCell("Uniques");
 			odsTable.writeCell(hashProt.getUniquePeptideHashSampleScan());