Commits · master · genotoul-bioinfo / ngspipelines

10 Jan, 2018 4 commits
- Delete .pydevproject · 8a9c79ab
  Jerome Mariette authored Jan 10, 2018
  
  8a9c79ab
- Delete .project · 40974eda
  Jerome Mariette authored Jan 10, 2018
  
  40974eda
- Delete README · 4c4cb5e4
  Jerome Mariette authored Jan 10, 2018
  
  4c4cb5e4
- Add license · ec06408b
  Jerome Mariette authored Jan 10, 2018
  
  ec06408b
30 Jun, 2017 1 commit
- Debug order or normalisation factor · 522687b3
  Celine Noirot authored Jun 30, 2017
  
  522687b3
24 Mar, 2017 1 commit
- integrate Cedric comment on gene_name extraction and species name extraction from db description. · 5637bfd5
  Celine Noirot authored Mar 24, 2017
  
  5637bfd5
16 Mar, 2017 1 commit
- Set default memory of snpeff to JAVA_HUGE_MEM · 068d272f
  Celine Noirot authored Mar 16, 2017
  
  068d272f
13 Mar, 2017 1 commit
- Avoid X adding before library name when library name begin by a number. · 89f3e0c2
  Celine Noirot authored Mar 13, 2017
  
  89f3e0c2
02 Mar, 2017 3 commits
- Do not crash on gff3 empty line · 72868917
  Celine Noirot authored Mar 02, 2017
  
  72868917
- Delete useless function · f61ab76b
  Celine Noirot authored Mar 02, 2017
  
  f61ab76b
- Try to handle species in refseq database. · 93a7ae2f
  Celine Noirot authored Mar 02, 2017
  
  93a7ae2f
27 Feb, 2017 1 commit
- Get species from swissprot definition · c44ea033
  Celine Noirot authored Feb 27, 2017
```
Force creation of symbolic link in addinstance.
```
  c44ea033
17 Feb, 2017 2 commits
- Change quote of renameRules component to pass on cluster env. · 545b4e51
  Celine Noirot authored Feb 17, 2017
  
  545b4e51
- Change orde of renameRules component to pass on cluster env. · 0998f945
  Celine Noirot authored Feb 17, 2017
  
  0998f945
10 Feb, 2017 1 commit
- handle snpeff3.6 files · 707723dd
  Celine Noirot authored Feb 10, 2017
  
  707723dd
09 Feb, 2017 1 commit
- correct test for Go and Keyword file · 293401e5
  Celine Noirot authored Feb 09, 2017
  
  293401e5
03 Feb, 2017 1 commit
- Config nb thread for diamond · 7311acc9
  Celine Noirot authored Feb 03, 2017
```
Convert gene name in upper case
```
  7311acc9
30 Jan, 2017 1 commit
- Add option --split to provide number of contig · c6f337c6
  Celine Noirot authored Jan 30, 2017
  
  c6f337c6
17 Jan, 2017 1 commit
- debug · 9e189bfc
  Celine Noirot authored Jan 17, 2017
  
  9e189bfc
16 Jan, 2017 1 commit
- parallelize tSNPannot and snpEff · 6c61d7d0
  Celine Noirot authored Jan 16, 2017
```
debug rename rules with only prefix
```
  6c61d7d0
13 Jan, 2017 1 commit
- Debug GO check format. · e56c7f8e
  Celine Noirot authored Jan 13, 2017
  
  e56c7f8e
12 Jan, 2017 1 commit
- Add transdecoder as a component. · 7d8bca9b
  Celine Noirot authored Jan 12, 2017
```
Can load orf and snp effect
```
  7d8bca9b
10 Jan, 2017 3 commits
- Remove snpEff in loading function. · d6824381
  Celine Noirot authored Jan 10, 2017
  
  d6824381
- Adapt to snpEff 4.2 · c988931a
  Celine Noirot authored Jan 10, 2017
  
  c988931a
- remove empty line · 20feac6e
  Celine Noirot authored Jan 10, 2017
  
  20feac6e
09 Jan, 2017 1 commit
- Add SnpEff Analysis · 270f04de
  Celine Noirot authored Jan 09, 2017
  
  270f04de
04 Jan, 2017 2 commits
- Debug with source from prod. · 040344fe
  Celine Noirot authored Jan 04, 2017
  
  040344fe
- Add diamond aligner · 405f52eb
  Celine Noirot authored Jan 04, 2017
  
  405f52eb
03 Nov, 2016 2 commits
- help update Differential Expression analysis: task 1638 (RNAbrowse) · eaabbeb8
  Claire Hoede authored Nov 03, 2016
  
  eaabbeb8
- help update Differential Expression analysis: task 1638 (RNAbrowse) · 50048ea5
  Claire Hoede authored Nov 03, 2016
  
  50048ea5
02 Aug, 2016 1 commit
- Remove output directory from shell execution to avoid directory to be removed... · dc4a29bb
  Celine Noirot authored Aug 02, 2016
```
Remove output directory from shell execution to avoid directory to be removed when a rerun is called.
```
  dc4a29bb
19 Jul, 2016 1 commit
- updated varna.jar -> forna.js · ef6ef282
  rongaro rongaro authored Jul 19, 2016
```
added forna controls
deleted varna-3.9.jar
```
  ef6ef282
04 Jul, 2016 1 commit
- Deub snp optimisation, · 3926b1e1
  Celine Noirot authored Jul 04, 2016
```
change min-cov works on subject and no more on query.
```
  3926b1e1
22 Jun, 2016 1 commit
- Call correctly haplotype caller · 23d9d52f
  Celine Noirot authored Jun 22, 2016
  
  23d9d52f
16 Jun, 2016 1 commit
- Enable and disable Run button when an analyse is running · c8444e45
  Celine Noirot authored Jun 16, 2016
  
  c8444e45
15 Jun, 2016 2 commits
- debug eyes open · d3b76c3c
  Celine Noirot authored Jun 15, 2016
  
  d3b76c3c
- Derniere modif affichage Philippe · 4092836e
  Celine Noirot authored Jun 15, 2016
  
  4092836e
13 Jun, 2016 1 commit
- Optimize SNP calling. · 069d472c
  Celine Noirot authored Jun 13, 2016
  
  069d472c
09 Jun, 2016 2 commits
- Useless work of pavel · 300c79d2
  Celine Noirot authored Jun 09, 2016
  
  300c79d2
- Changement orientation lib name + echelle log · dc181a07
  Celine Noirot authored Jun 09, 2016
  
  dc181a07