Add SnpEff Analysis (270f04de) · Commits · genotoul-bioinfo / ngspipelines · GitLab

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A compter du 1er avril, attention à vos pipelines : Nouvelles limitations de Docker Hub

270f04de

Commit 270f04de authored 8 years ago by Celine Noirot

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Add SnpEff Analysis

parent 040344fe

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Changes 9

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application.properties 8 additions, 1 deletion

application.properties
biomart-plugin/ngspipelines/public/ngspipelines/js/controller/variantdenovo/variantreport.js 7 additions, 2 deletions

...ngspipelines/js/controller/variantdenovo/variantreport.js
biomart-plugin/ngspipelines/public/ngspipelines/js/model/variantdenovo/variantreport.js 53 additions, 2 deletions

...blic/ngspipelines/js/model/variantdenovo/variantreport.js
biomart-plugin/ngspipelines/public/ngspipelines/js/view/variantdenovo/variantreport.tmpl 62 additions, 4 deletions

...lic/ngspipelines/js/view/variantdenovo/variantreport.tmpl
src/jflow/featureiolib/vcf.py 1 addition, 1 deletion

src/jflow/featureiolib/vcf.py
workflows/rnaseqdenovo/__init__.py 15 additions, 4 deletions

workflows/rnaseqdenovo/__init__.py
workflows/rnaseqdenovo/components/diamond.py 2 additions, 2 deletions

workflows/rnaseqdenovo/components/diamond.py
workflows/rnaseqdenovo/components/snpEff.py 146 additions, 0 deletions

workflows/rnaseqdenovo/components/snpEff.py
workflows/rnaseqdenovo/lib/variantdenovo.py 53 additions, 0 deletions

workflows/rnaseqdenovo/lib/variantdenovo.py

with 347 additions and 16 deletions

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