parallelize tSNPannot and snpEff (6c61d7d0) · Commits · genotoul-bioinfo / ngspipelines · GitLab

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A compter du 1er avril, attention à vos pipelines : Nouvelles limitations de Docker Hub

6c61d7d0

Commit 6c61d7d0 authored 8 years ago by Celine Noirot

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parallelize tSNPannot and snpEff

debug rename rules with only prefix

parent e56c7f8e

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Changes 8

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workflows/rnaseqdenovo/__init__.py 13 additions, 10 deletions

workflows/rnaseqdenovo/__init__.py
workflows/rnaseqdenovo/bin/sam2count.py 0 additions, 163 deletions

workflows/rnaseqdenovo/bin/sam2count.py
workflows/rnaseqdenovo/components/gatkfilter.py 56 additions, 0 deletions

workflows/rnaseqdenovo/components/gatkfilter.py
workflows/rnaseqdenovo/components/index_fai_dict.py 4 additions, 4 deletions

workflows/rnaseqdenovo/components/index_fai_dict.py
workflows/rnaseqdenovo/components/renamerules.py 4 additions, 4 deletions

workflows/rnaseqdenovo/components/renamerules.py
workflows/rnaseqdenovo/components/snpEff.py 17 additions, 65 deletions

workflows/rnaseqdenovo/components/snpEff.py
workflows/rnaseqdenovo/components/splitVCF.py 49 additions, 0 deletions

workflows/rnaseqdenovo/components/splitVCF.py
workflows/rnaseqdenovo/components/tsnpannot.py 21 additions, 74 deletions

workflows/rnaseqdenovo/components/tsnpannot.py

with 164 additions and 320 deletions

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