Commits · 6c61d7d0347531bcb0094b81852e6e34557b1510 · genotoul-bioinfo / ngspipelines

Jan 16, 2017
- parallelize tSNPannot and snpEff · 6c61d7d0
  Celine Noirot authored 8 years ago
  
  debug rename rules with only prefix
  6c61d7d0
Jan 13, 2017
- Debug GO check format. · e56c7f8e
  Celine Noirot authored 8 years ago
  
  e56c7f8e
Jan 12, 2017
- Add transdecoder as a component. · 7d8bca9b
  Celine Noirot authored 8 years ago
  
  Can load orf and snp effect
  7d8bca9b
Jan 10, 2017
- Remove snpEff in loading function. · d6824381
  Celine Noirot authored 8 years ago
  
  d6824381
- Adapt to snpEff 4.2 · c988931a
  Celine Noirot authored 8 years ago
  
  c988931a
- remove empty line · 20feac6e
  Celine Noirot authored 8 years ago
  
  20feac6e
Jan 09, 2017
- Add SnpEff Analysis · 270f04de
  Celine Noirot authored 8 years ago
  
  270f04de
Jan 04, 2017
- Debug with source from prod. · 040344fe
  Celine Noirot authored 8 years ago
  
  040344fe
- Add diamond aligner · 405f52eb
  Celine Noirot authored 8 years ago
  
  405f52eb
Nov 03, 2016
- help update Differential Expression analysis: task 1638 (RNAbrowse) · eaabbeb8
  Claire Hoede authored 8 years ago
  
  eaabbeb8
- help update Differential Expression analysis: task 1638 (RNAbrowse) · 50048ea5
  Claire Hoede authored 8 years ago
  
  50048ea5
Aug 02, 2016
- Remove output directory from shell execution to avoid directory to be removed... · dc4a29bb
  Celine Noirot authored 8 years ago
  
  Remove output directory from shell execution to avoid directory to be removed when a rerun is called.
  dc4a29bb
Jul 19, 2016
- updated varna.jar -> forna.js · ef6ef282
  rongaro rongaro authored 8 years ago
  
  added forna controls deleted varna-3.9.jar
  ef6ef282
Jul 04, 2016
- Deub snp optimisation, · 3926b1e1
  Celine Noirot authored 8 years ago
  
  change min-cov works on subject and no more on query.
  3926b1e1
Jun 22, 2016
- Call correctly haplotype caller · 23d9d52f
  Celine Noirot authored 8 years ago
  
  23d9d52f
Jun 16, 2016
- Enable and disable Run button when an analyse is running · c8444e45
  Celine Noirot authored 8 years ago
  
  c8444e45
Jun 15, 2016
- debug eyes open · d3b76c3c
  Celine Noirot authored 8 years ago
  
  d3b76c3c
- Derniere modif affichage Philippe · 4092836e
  Celine Noirot authored 8 years ago
  
  4092836e
Jun 13, 2016
- Optimize SNP calling. · 069d472c
  Celine Noirot authored 8 years ago
  
  069d472c
Jun 09, 2016
- Useless work of pavel · 300c79d2
  Celine Noirot authored 8 years ago
  
  300c79d2
- Changement orientation lib name + echelle log · dc181a07
  Celine Noirot authored 8 years ago
  
  dc181a07
- Reorganize section options. · 1fd70c4f
  Celine Noirot authored 8 years ago
  
  Add comment in load config file
  1fd70c4f
Jun 08, 2016
- Config file commented to help usage. · 7a046f83
  Celine Noirot authored 8 years ago
  
  7a046f83
- Config file commented to help usage. · 1bf503d3
  Celine Noirot authored 8 years ago
  
  1bf503d3
- Correct 2 things : · 574bf11e
  Celine Noirot authored 8 years ago
  
  - do not zip merge_count.cvs - no more need to have same lib name and fastq file name.
  574bf11e
- Debug favorite · 691c5ecd
  Celine Noirot authored 8 years ago
  
  691c5ecd
- Debug add to favorite · 6bf46400
  Celine Noirot authored 8 years ago
  
  6bf46400
Jun 07, 2016
- Optimization of rarefaction curves · 7c285ea8
  Celine Noirot authored 8 years ago
  
  Debug normalization when only 2 libs are provided
  7c285ea8
Jun 06, 2016
- Philippe updates, add tooltip and organize result page · fca8a86d
  Celine Noirot authored 8 years ago
  
  fca8a86d
- Debug best_annot in load and debug normalization with only one library · 77b5da20
  Celine Noirot authored 8 years ago
  
  77b5da20
- Create data link in plugin · 5fcd38a9
  Celine Noirot authored 8 years ago
  
  5fcd38a9
May 31, 2016
- Debug variant.file parameters · 02700366
  Celine Noirot authored 8 years ago
  
  02700366
May 30, 2016
- Debug load without vcf. · 2a8699de
  Celine Noirot authored 8 years ago
  
  2a8699de
May 13, 2016
- if hit name is none, use the hit id for the name in the gff file · 917ee791
  Claire Hoede authored 8 years ago
  
  917ee791
May 11, 2016
- Add Rscript 3.2 · 783707cd
  Celine Noirot authored 8 years ago
  
  783707cd
- recompile jar with java 1.6 as on ngspipelines server · fc572014
  Celine Noirot authored 8 years ago
  
  fc572014
Apr 29, 2016
- Compile with java 1.6 · b2f6af6c
  Celine Noirot authored 9 years ago
  
  b2f6af6c
Apr 25, 2016
- bug best annotations count · 48a7d3a8
  orue orue authored 9 years ago
  
  48a7d3a8
Apr 22, 2016
- bad parsing of rfam informations · ac4f6174
  orue orue authored 9 years ago
  
  ac4f6174
Apr 15, 2016
- integration of EdgeR, reste la visu a ameliorer. · 84843755
  Celine Noirot authored 9 years ago
  
  84843755