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Projet de la version V2 de l'application des ORE.
Le projet est constitué de 2 sous projet :
La partie serveur qui fournit les web services de l'application
La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service
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SAMBA (R) est une interface pour analyser les résultats de sampling de réseaux métaboliques générés à partir de SAMBApy sous Python. Elle est composée d'une une partie comparaison (calcul de différence) et une partie visualisation graphique des résultats.
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MassChroQ (Mass Chromatogram Quantification) is a powerfull and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from Liquid Chromatography-Mass Spectrometry techniques.
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Link to running app: https://matrixapp.sk8.inrae.fr
MATRiX is a shiny application dedicated to Mining and Analysis of Transcriptomics data using common biostatistic result files (statistical test result table, normalised data table and samples-groups information). This application helps biologists to perform data exploration with PCA, Venn diagrams, StripCharts, volcanoplots, and Heatmap clustering of genes lists (selecting statistical thresholds) and functional enrichment analyses using a connection to enrichr. https://matrixapp.sk8.inrae.fr
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A Python scripting interface for CB-Geo MPM
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ESKRIM: EStimate with K-mers the RIchness in a Microbiome
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Mon container applicatif en 30minutes
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A presentation and day book area.
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Comparative analysis of neural methods for entity normalization in the biological field.
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iso DataIntegration Omics+ 1 more
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Scripts related with database development in stacomi.
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DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.
This tool is expected to be easily customizable for specific filters, environments, or data schemas.
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Base docker image for Rare project
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Package R with a shiny interface to run an interactive differential gene/region expression analysis.
