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Species Perscrutandis Enixe Locis Locabuntur.

A standalone version of the function performing dynamic programming in a band

The computer-model tool CRASH (Crops Rotation and Allocation Simulator using Heuristics) aims at helping technical advisors in supporting farmers in their choices and anticipating agricultural water needs depending on crop acreage.

A gene finding software for eukaryotic and prokaryotic organisms.

mechanistic-statistical environement

https://olivier.bonnefon.pages.mia.inra.fr/mse/

A presentation and day book area.

R'MES is a tool for studying word frequencies in biological sequences.

Pompd: Positive Multistate Protein Design

Produce an epidemiological risk map by weighting multiple risk factors. https://umr-astre.pages.mia.inra.fr/mapMCDA/

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

Cirad institutional LaTeX package

Multiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.

Lightweight C++ and Java library to produce Open Document Spreadsheet (.ods) files. The main goal is to write data as simply as writing it to a simple text file (csv or tsv). Libodsstream allows yout to read and write ODS files as stream

set of usefull mass spectrometry and proteomics utilities used by the PAPPSO team (http://pappso.inra.fr/). Get ion tables from peptides, SVG drawings of MS/MS annotated spectrum, expected intensity ratio of isotopes from a peptide....

A clone of the PMRF code (MIT licence) to be able to add some minor bells and whistles for symmetry handling

PAPPSOms++ is a comprehensive C++ library including usefull functions to handle proteomics data (spectrum, peptides, ions, isotopes).

Species Perscrutandis Enixe Locis Locabuntur.

Construction and Analysis of Protein-Protein Interactions (PPI) NETWORKS for complexes and biological processes

"beads" (billes en Français) est un logiciel de détection et de quantification de spots sur des images de gels d'électrophorèse bidimensionnelle.