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Suivi des Applications jaVa d'Agroclim (Documentation en ligne).

PASTE (Platform for Automated Simulation and Tools in Epidemiology) is a software pipeline that produces a web architecture for a decision-support tool based on mechanistic epidemiological models (written with EMULSION)

SATLAND is an application to detect and characterize hotspots of change. It is based on Python libraries (xarray, Bfast, rasterio for back-end, Streamlit for Front-End)

panTEannot serially annotates transposable elements from multiple genomes using a common reference library. The annotation is a light version of TEannot from REPET package. These annotations can be used as input for the panREPET tool.

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

Bibliothèque Java pour calculer des indicateurs agro- et éco-climatiques à partir de données climatiques journalières ou horaires et des donnés phénologiques. Un des modèles phénologiques peut être utilisé à la place des données phénologiques. (Documentation en ligne)

Modifications of GTNash for code readability - readability is entirely subjective! The original functionality should remain the same.

GWT experiments: minimum and basic dependencies to run on Tomcat along with code quality checkers.

Galaxy wrappers for met4j apps

The Orfeo ToolBox (OTB) extension for Deep Learning. Enable the use of TensorFlow models on Remote Sensing images. Provides OTB applications for patches sampling, model training, model inference, hybrid models, and so on.

Decloud is a framework to remove clouds in Sentinel-2 images from joint Sentinel-1 (SAR) and Sentinel-2 (Optical) images or time series.