panREPET

Project information

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

76 Commits
2 Branches
0 Tags

README
CeCILL Free Software License Agreement v2.0

Created on

March 13, 2020

Copy SSH clone URLgit@forgemia.inra.fr:urgi-anagen/panREPET.git
Copy HTTPS clone URLhttps://forgemia.inra.fr/urgi-anagen/panREPET.git