Explore projects
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GQE-BASE / MiniRead
GNU General Public License v3.0 onlyHardware description and pieces of software for DIY MiniRead 96-well plate optical reader, designed to monitor growth kinetics of yeast (or bacterial) cells.
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PAPPSO / i2MassChroQ
GNU General Public License v3.0 onlyi2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution
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Scripts used in: "Integration of genomic selection into winter-type bread wheat breeding schemes: a simulation pipeline including economic constraints" S. Ben-Sadoun, A. Fugeray-Scarbel, J. Auzanneau, G. Charmet, S. Lemarié, S. Bouchet
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Source code for the modelling and inference approach implemented by the INRAE team
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Joseph Tran / getSeqFlankBlatHit
GNU General Public License v2.0 or laterGetting sequences flanking blat hits / Extraction des séquences flanquantes les hits blat.
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Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.
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GQE-ACEP / SeSAM
GNU General Public License v3.0 or laterThe SeSAM R package allows fully automatic construction of two successive genetic maps: a first one including an optimized subset of markers ensuring the robustness of orders to a given statistical threshold, and a second one including almost all polymorphic markers. It can handle all common types of biparental mapping populations, including progenies obtained from crossing heterozygous parents. In addition to the automatic procedure, SeSAM includes many functions for interactive mapping, file formats conversions, and generates many graphs useful to assess the quality of data and maps.
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SIMONCINI DAVID / pils
GNU General Public License v3.0 onlyUpdated -
Intern development of the methods for microbial guild inference and clustering
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Code de l'ESP32 utilisé dans le cadre du projet détecteur de CO2 https://jouy.pepiniere.inrae.fr/#!/projects/detecteur-co2-pour-inciter-a-l-aeration-des-locaux
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Pole MIAME / Acoustic / acoustique
GNU Lesser General Public License v2.1 onlyUpdated -
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metagenopolis / meteor
GNU General Public License v3.0 onlyMeteor (Metagenomic Explorator), a software for profiling metagenomic data at gene level
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About Weighted Constraint Satisfaction Problem (WCSP). Réseaux de contraintes pondérées, Réseaux de fonctions de coût. toulbar2 : solver for cost function networks.
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