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PAPPSO / libXpertMass
GNU General Public License v3.0 or laterUpdated -
PAPPSO / i2MassChroQ
GNU General Public License v3.0 onlyi2MassChroQ (identification & inference -- mass chromatogram quantification) is the successor of X!TandemPipeline-Java. Following a full rewrite in C++17 and integration of the MassChroQ module, i2MassChroQ features a quantitative proteomics solution
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PAPPSO / pappsomspp
GNU General Public License v3.0 onlyPAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...
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Gauthier Quesnel / irritator
MIT LicenseUpdated -
mechanistic-statistical environement
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Jerome Duriez / trunkMine
GNU General Public License v2.0 or laterUpdated -
URGI-Anagen / TE_finder
CeCILL Free Software License Agreement v2.0A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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open hardware / SETIER Datalogger
CERN Open Hardware Licence Version 2 - Strongly ReciprocalUpdated -
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Orfeo ToolBox / otbtf
Apache License 2.0The Orfeo ToolBox (OTB) extension for Deep Learning. Enable the use of TensorFlow models on Remote Sensing images. Provides OTB applications for patches sampling, model training, model inference, hybrid models, and so on.
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PAPPSO / MassChroQ
GNU General Public License v3.0 onlyMassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.
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Orfeo ToolBox / otb-onnx
Apache License 2.0Run deep learning models from pytorch, tensorflow, keras, Caffe2, Microsoft Cognitive Toolkit, Apache MXNet, etc
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PAPPSO / massxpert2
GNU General Public License v3.0 onlymassXpert2 (of the http://www.msxpertsuite.org software collection) is a desktop-oriented program that allows one to create polymer chemistry definitions. The definitions are then used to perform calculations in a desktop calculator-like manner and to perform sophisticated polymer sequence mass spectrometry simulations.
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FACT / fact
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The aim of this project is to provide an R package for big integer (and big rational) computations. This is achieved via an C++ interface to the GNU MP ("GMP") library, and S3 classes "bigz", "bigq", etc.
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metagenopolis / meteor
GNU General Public License v3.0 onlyMeteor (Metagenomic Explorator), a software for profiling metagenomic data at gene level
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PAPPSO / tandemng-mass
Artistic License 1.0 (Perl)Updated