Explore projects
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List of workflows (nextflow/snakemake) tested for Genotoul Cluster.
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seqOccIn / HiFi metabarcoding analysis
GNU General Public License v3.0 or laterUpdated -
UMR GDEC / magatt
GNU General Public License v3.0 or laterPipeline used to tranfert gene annotation (GFF3) between different versions of assemblies.
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GANGLOFF Hugo / xpcax
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Orfeo ToolBox / pyotb
Apache License 2.0pyotb is a library that enables easy use of the Orfeo Tool Box (OTB) in Python
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Omnicrobe / Omnicrobe web
Apache License 2.0Updated -
GQE-ABISoft / DiverCILand
GNU Affero General Public License v3.0Updated -
PO2-Tools / PO²Manager
MIT LicenseUpdated -
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GQE-ABISoft / Thaliadb
GNU Affero General Public License v3.0Updated -
URGI-Anagen / panREPET
CeCILL Free Software License Agreement v2.0panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.
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BATARDIERE Bastien / pyPLNmodels
MIT LicenseUpdated -
Omnicrobe / text-mining-workflow
Apache License 2.0Updated -
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Ludovic Mailleret / Discrete logistic app
GNU Affero General Public License v3.0Updated -
On-line doctoral training on EMULSION
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DipSO / tsv2properties
BSD 3-Clause "New" or "Revised" LicenseGénération de fichiers .properties de traduction pour Dataverse à partir de fichiers de métadonnées .tsv"
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