Commits · c582234a8d9638562d809f67c9ee44bdaed7b1c9 · QTL / spell-qtl

May 11, 2017
- Adding user manuel · c582234a
  Sylvain Jasson authored 7 years ago
  
  c582234a
- There might still be a crash when exiting but it's mostly stable otherwise. · b64128cd
  Damien Leroux authored 7 years ago
  
  b64128cd
May 10, 2017
- New implementation of taskpool supersedes the older 3rd-party threadpool. · 44494e56
  Damien Leroux authored 7 years ago
  
  44494e56
Apr 06, 2017
- fixes [#3434]. · f7ef4771
  Damien Leroux authored 7 years ago
  
  f7ef4771
- fixes [#3430] · 658049f5
  Damien Leroux authored 7 years ago
  
  658049f5
- closes [#3437] · cbe99d99
  Damien Leroux authored 7 years ago
  
  cbe99d99
Mar 21, 2017
- Now handling pleiotropy, covariables, and defining subsets to work on in commandline. · 9f008bbc
  Damien Leroux authored 8 years ago
  
  9f008bbc
Feb 23, 2017
- Added some simulated data and a hidden output in spell-marker to double-check the results. · 90db7d98
  Damien Leroux authored 8 years ago
  
  90db7d98
Jan 07, 2017
- Oops. Had forgotten to give the proper URI to the workers in SGE mode. · 0c100333
  Damien Leroux authored 8 years ago
  
  0c100333
- Replaced FIFO with TCP server/client. · 79fc7b44
  damien authored 8 years ago
  
  FIFO can't work across multiple machines. It was a stupid design idea.
  79fc7b44
- Fixing compilation and SGE behaviour on cluster. · d4bb818a
  Damien Leroux authored 8 years ago
  
  d4bb818a
Jan 06, 2017
- Little tweaks to the manpages. · e96ae544
  damien authored 8 years ago
  
  e96ae544
Jan 03, 2017
- Fixed manpage (removed popdata argument) and cmakefile. · 5ec867ec
  damien authored 8 years ago
  
  5ec867ec
- Set tag for alpha release. · 27dfef91
  damien authored 8 years ago
  
  27dfef91
- Added examples and R script to package. · 6ef8d0f5
  damien authored 8 years ago
  
  6ef8d0f5
- Added F3-outbred example. · 4637465c
  damien authored 8 years ago
  
  4637465c
- About ready to tag for alpha release. · d7301388
  damien authored 8 years ago
  
  d7301388
- Added script to compare 1-point and n-point. · 4146ad9e
  damien authored 8 years ago
  
  4146ad9e
- Organized the output files and added a log file for spell-qtl. · 6d23722a
  damien authored 8 years ago
  
  6d23722a
- Added lineobs to tweak the output .gen files and allow for proper 02 obs. · 7d15b909
  damien authored 8 years ago
  
  7d15b909
Dec 30, 2016
- Fixed few things in the CLIs and added man pages. · cb9155a2
  damien authored 8 years ago
  
  cb9155a2
Dec 29, 2016
- Added rough packaging instructions. · 9582208e
  damien authored 8 years ago
  
  9582208e
Dec 28, 2016
- Added output options for spell-marker. Untested. · 4685f2c6
  damien authored 8 years ago
  
  4685f2c6
- Added missing file. · 8fecadf0
  damien authored 8 years ago
  
  8fecadf0
Dec 22, 2016
- Commented out some CLI options and completed format CP. · 3ddff947
  Damien Leroux authored 8 years ago
  
  3ddff947
- Merge branch 'new_model_impl' of... · cd94702d
  damien authored 8 years ago
  
  Merge branch 'new_model_impl' of git+ssh://scm.mulcyber.toulouse.inra.fr//var/lib/gforge/chroot/scmrepos/git/spel/spel into new_model_impl
  cd94702d
Dec 20, 2016
- Applied GPL to all current source code. · 02e225f6
  damien authored 8 years ago
  
  02e225f6
Dec 12, 2016
- Applied MIT license to the code. · 35f5bca3
  Damien Leroux authored 8 years ago
  
  35f5bca3
- Removed expat as a dependency from spell-marker. · ce9eacf1
  Damien Leroux authored 8 years ago
  
  ce9eacf1
Nov 22, 2016
- Added some simulated data and a hidden output in spell-marker to double-check the results. · bbfbc4c1
  Damien Leroux authored 8 years ago
  
  bbfbc4c1
- Replaced cumbersome XML marker obs spec implementation with a sexier... · 5303d460
  Damien Leroux authored 8 years ago
  
  Replaced cumbersome XML marker obs spec implementation with a sexier json-based one. More user-friendly too.
  5303d460
- Deleted unused code. · c6835611
  Damien Leroux authored 8 years ago
  
  c6835611
Nov 18, 2016
- Implemented min-cut to handle table products in huge joint domains. · 014604ce
  Damien Leroux authored 8 years ago
  
  014604ce
- Merge branch 'new_model_impl' of... · fcc66c6b
  Damien Leroux authored 8 years ago
  
  Merge branch 'new_model_impl' of git+ssh://scm.mulcyber.toulouse.inra.fr//var/lib/gforge/chroot/scmrepos/git/spel/spel into new_model_impl
  fcc66c6b
- Pipeline works, but there is an issue with big products. · 04ad4293
  Damien Leroux authored 8 years ago
  
  04ad4293
- Switching to CLion and CMake. · be61fe3b
  damien authored 8 years ago
  
  be61fe3b
Nov 15, 2016
- Need to re-implement the creation of the LV. · 4f0af463
  Damien Leroux authored 8 years ago
  
  Bayesian computation seems to work but we still need the output in the form of locus vectors.
  4f0af463
Nov 09, 2016
- Added final optimization to squeeze factors. · 8e784d99
  Damien Leroux authored 8 years ago
  
  8e784d99
- Added factor computation to new implementation. · 099251aa
  Damien Leroux authored 8 years ago
  
  099251aa
- New implementation of graph_type&co. · eae0fd1c
  Damien Leroux authored 8 years ago
  
  This one is good, the old code was so bad and ugly.
  eae0fd1c

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