Commits · ae5e9fe3352e3731e118c87167c3e8107a067834 · UMR GDEC / magatt

Nov 13, 2020
- cleaning code with temporary files · ae5e9fe3
  Helene Rimbert authored 4 years ago
  
  ae5e9fe3
Jun 17, 2020

Helene Rimbert authored 4 years ago

now the nomenclature of the new geen ids can be setup in the config.yaml file. Also 2 new rules to compile the blat results and the anchoring summary

76659a23

May 29, 2020
- new rules to validate cds using fastavalidecds from Exonerate package · 0bee6560
  Helene Rimbert authored 4 years ago
  
  0bee6560
May 28, 2020
- 1st dev fial version · 08268dae
  Helene Rimbert authored 4 years ago
  
  View commits for tag v0.1 v0.1
  
  08268dae
May 19, 2020
- add recal from blat GFF as final target for "all" rule · b18ab4a3
  Helene Rimbert authored 4 years ago
  
  b18ab4a3
May 14, 2020
- convertion of the gff file from GMAP after the rescue of misaligned genes is OK. · d0910f29
  Helene Rimbert authored 4 years ago
  
  d0910f29
Feb 25, 2020
- main snake rule parallelised per chromosome · ba82479e
  Helene Rimbert authored 5 years ago
  
  ba82479e
Dec 20, 2019
- add result directory to gitignore file, remove markersIds from mapping pipeline · 7465d454
  Helene Rimbert authored 5 years ago
  
  7465d454
Dec 16, 2019
- add indexing of reference sequences with samtools faidx · 479d76b6
  Helene Rimbert authored 5 years ago
  
  479d76b6
- update snakemake rules · 953851b9
  Helene Rimbert authored 5 years ago
  
  953851b9
- revert from nextflow to snakemake · 5b5d9130
  Helene Rimbert authored 5 years ago
  
  5b5d9130
Jul 05, 2019
- snakemake pipeline for the gmap anchoring and stats · b85ceff5
  Helene Rimbert authored 5 years ago
  
  b85ceff5