Skip to content

GitLab

Explore

Sign in

Primary navigation

Project

M

magatt
- Activity
- Members
- Labels
- Issues
- Issue boards
- Milestones
- Wiki
- Environments
- Incidents

Snippets Groups Projects

b85ceff5

Commit b85ceff5 authored 5 years ago by Helene Rimbert

Downloads
- Patches
- Plain Diff

snakemake pipeline for the gmap anchoring and stats

parent 954998b1

No related branches found

No related tags found

No related merge requests found

Changes 11

Expand all Hide whitespace changes

Inline Side-by-side

Showing

Snakefile 13 additions, 0 deletions

Snakefile
bin/gff2bed.sh 5 additions, 0 deletions

bin/gff2bed.sh
bin/gmapstats.py 213 additions, 0 deletions

bin/gmapstats.py
bin/plot_geneLength_distribution.R 25 additions, 0 deletions

bin/plot_geneLength_distribution.R
bin/run_gmap.sh 16 additions, 0 deletions

bin/run_gmap.sh
config.yaml 5 additions, 0 deletions

config.yaml
test_data/annot.gff3 500 additions, 0 deletions

test_data/annot.gff3
test_data/features.bed 25 additions, 0 deletions

test_data/features.bed
test_data/features.fasta 50 additions, 0 deletions

test_data/features.fasta
test_data/gmap.psl 65 additions, 0 deletions

test_data/gmap.psl
test_data/test.psl 50 additions, 0 deletions

test_data/test.psl

with 967 additions and 0 deletions

Loading

0% Loading or .

You are about to add 0 people to the discussion. Proceed with caution.

Finish editing this message first!

Please register or sign in to comment