Commits · 9203fae40fb37c5a26854b8ab27c613b75a780f8 · SVdetection / popsim

Jul 11, 2017
- Allow to input genotype file with deletions already set · 0b79f4ea
  Floreal Cabanettes authored 7 years ago
  
  0b79f4ea
- Update popsim to the new pirs version · a2dd8a72
  Floreal Cabanettes authored 7 years ago
  
  a2dd8a72
Jun 30, 2017
- Fix log file to a file instead of stdout/err · 0341b710
  Floreal Cabanettes authored 7 years ago
  
  0341b710
Jun 29, 2017
- Returns exit status · c295497c
  Floreal Cabanettes authored 7 years ago
  
  c295497c
- Remove ungzipped vcf file · 80e9067d
  Floreal Cabanettes authored 7 years ago
  
  80e9067d
- Add minimum number of deletions to generate parameter · b45bc530
  Floreal Cabanettes authored 7 years ago
  
  b45bc530
- Prevent deletions to be localized inside N stretches · f3598738
  Floreal Cabanettes authored 7 years ago
  
  f3598738
Jun 23, 2017
- rename erase_output force_outputdir · aa2d6331
  Floreal Cabanettes authored 7 years ago
  
  aa2d6331
Jun 22, 2017
- Update build pop to enable stdout/err redirecting · 74657bda
  Floreal Cabanettes authored 7 years ago
  
  74657bda
- Add init function to call build_pop as a module · 6427b4bd
  Floreal Cabanettes authored 7 years ago
  
  6427b4bd
Jun 21, 2017
- Add chromosomes infos to confirmation task · 49f666d0
  Floreal Cabanettes authored 7 years ago
  
  49f666d0
- Add parallelisation for deletions positionning · 1da11cd1
  Floreal Cabanettes authored 7 years ago
  
  1da11cd1
- Some improvements · e4a96663
  Floreal Cabanettes authored 7 years ago
  
  e4a96663
Jun 20, 2017
- Remove unused import · 0465abac
  Floreal Cabanettes authored 7 years ago
  
  0465abac
- Add missing short options · d2be5ec3
  Floreal Cabanettes authored 7 years ago
  
  d2be5ec3
- Add threads for pirs · 767f84e9
  Floreal Cabanettes authored 7 years ago
  
  767f84e9
- Generate deletions positions and size with our algorithm instead of SVSim · a60719b5
  Floreal Cabanettes authored 7 years ago
  
  a60719b5
Jun 09, 2017
- Remove unused check · 62de38ec
  Floreal Cabanettes authored 7 years ago
  
  62de38ec
- Exit if output dir exists · 2e6ff9d5
  Floreal Cabanettes authored 7 years ago
  
  2e6ff9d5
- refactoring · 11f5eaa5
  Floreal Cabanettes authored 7 years ago
  
  11f5eaa5
- refactoring · 139946d6
  Floreal Cabanettes authored 7 years ago
  
  139946d6
- Refactoring of build_pop script · fa876d5b
  Floreal Cabanettes authored 7 years ago
  
  fa876d5b
May 05, 2017
- Use mkdtemp to create temp dir + add try-except to fix bug on missing files · 3ef5dbea
  Floreal Cabanettes authored 7 years ago
  
  3ef5dbea
Apr 19, 2017
- Fix build pop script · 3790e7da
  Floreal Cabanettes authored 8 years ago
  
  3790e7da
- Fix build pop for diploids · 66b4bcfc
  Floreal Cabanettes authored 8 years ago
  
  66b4bcfc
- Fix python syntax · 0b04ea0a
  Floreal Cabanettes authored 8 years ago
  
  0b04ea0a
- Add options to reads generation · 9d7bc75d
  Floreal Cabanettes authored 8 years ago
  
  9d7bc75d
Apr 07, 2017
- Add haploid option · c40e6856
  Floreal Cabanettes authored 8 years ago
  
  c40e6856
Apr 06, 2017
- Bgzip+tabix genotypes simulated vcf file · 2e9b9abb
  Floreal Cabanettes authored 8 years ago
  
  2e9b9abb
Mar 31, 2017
- Add build XLS results file · ac5c9b18
  Floreal Cabanettes authored 8 years ago
  
  ac5c9b18
Mar 27, 2017
- Force polymorphism is now optional · 6bf39874
  Floreal Cabanettes authored 8 years ago
  
  6bf39874
Mar 24, 2017
- Fix tmp directory · 2be3834d
  Floreal Cabanettes authored 8 years ago
  
  2be3834d
- Fix tmp directory · 6d77eabc
  Floreal Cabanettes authored 8 years ago
  
  6d77eabc
- nb-inds must be higher than 2 · 7363af71
  Floreal Cabanettes authored 8 years ago
  
  7363af71
- Make sure there is always polymorph · b654d97e
  Floreal Cabanettes authored 8 years ago
  
  b654d97e
- Initial commit · be469528
  Floreal Cabanettes authored 8 years ago
  
  be469528